Click here to switch to the map view.

The map label for this gene is dnaQ

Identifier: 123965921

GI number: 123965921

Start: 623623

End: 624435

Strand: Direct

Name: dnaQ

Synonym: P9515_06861

Alternate gene names: NA

Gene position: 623623-624435 (Clockwise)

Preceding gene: 123965919

Following gene: 123965923

Centisome position: 36.59

GC content: 31.86

Gene sequence:

>813_bases
TTGGAACCATCTAACAAAAAAGTATTAAATCAACTGGATTTTCTTAAAAATGAAATTACAAATAATGATCTTGAAATAAA
AAAAACTTTAAATCAATCAATCTCAAACTCTAAAGTAAGAACTCAAAATAAAAAAATTGAAAAAATTTTAATTCTTGATA
CTGAAACTACTGGTTTAGACGAAAATAAAGATGAAATTATCGAGATAGGTTGTATTTTATTTCATGTGACTTCTAAATCA
GTGCTCTCACAGGTTTCGTTCTTATTCCCAGTAAGTTCAAATGAAGCGGAACATGTTAATGGGATATCTGCAGAAGTTAG
TAATATTAAACAACCTTGGGAAGAGGGCTTGAATTTCTTTTTGAAACTTGTGGATTGCGCAGATTTAATAGTTGCCCATA
ATGTTGAGTTTGACAAGAAATGGTTTGGTAAAGGGAGATTGCCCAATTTAGAGAAAAATTGGATTTGTAGTTTAGAGGAT
ATTAATTGGTCATTTCAAAAAAACTTAAAAAATAGACCTTCAGTAACTGATCTTGCTTTGTCTTTCTCAATCCCCGTTTG
GAGCTTACATAGAGCCTTATCTGATTGCTTTTATATCTCGGAAGTCTTCAAAAAATGCGAGAATTTAGAGGAACTTCTTA
TTAAAGCGACAGAACCAAGATTTTTATATAAAGCATTGGTAACTTATTCAGAAAGATCACTAGCTAAGAAGGCGGGATTT
CGCTGGAATAATCCTGCCGAGGGTGCTTGGGCTAGAAAATTAACTGTTGAAGAGGCTAATAGCCTTGATTTTAAAGTGCA
GATAATAAACTAA

Upstream 100 bases:

>100_bases
AAATAAGATTAAAATTCTTAATTAATTTTGTTTAATTATTATTAATTTAAGAGAAAAAAATATTAAATGCGTCAAGATAA
ATTAGAGTTTTTTTTGATAA

Downstream 100 bases:

>100_bases
TATTTTATTTTTTCTAAACTTAAATATTATTAGTGGTTTTTACATGGCATCCATTTCTCTCCCATTTTGTGTGCACCTAT
GCAGCCATATTTTGCAGCCT

Product: putative DNA polymerase III, epsilon subunit

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Subunit Epsilon; Exonuclease RNAse T And DNA Polymerase III; Exonuclease; Exonuclease RNAse T/DNA Polymerase III; 3--5' Exonuclease

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MEPSNKKVLNQLDFLKNEITNNDLEIKKTLNQSISNSKVRTQNKKIEKILILDTETTGLDENKDEIIEIGCILFHVTSKS
VLSQVSFLFPVSSNEAEHVNGISAEVSNIKQPWEEGLNFFLKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLED
INWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRFLYKALVTYSERSLAKKAGF
RWNNPAEGAWARKLTVEEANSLDFKVQIIN

Sequences:

>Translated_270_residues
MEPSNKKVLNQLDFLKNEITNNDLEIKKTLNQSISNSKVRTQNKKIEKILILDTETTGLDENKDEIIEIGCILFHVTSKS
VLSQVSFLFPVSSNEAEHVNGISAEVSNIKQPWEEGLNFFLKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLED
INWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRFLYKALVTYSERSLAKKAGF
RWNNPAEGAWARKLTVEEANSLDFKVQIIN
>Mature_270_residues
MEPSNKKVLNQLDFLKNEITNNDLEIKKTLNQSISNSKVRTQNKKIEKILILDTETTGLDENKDEIIEIGCILFHVTSKS
VLSQVSFLFPVSSNEAEHVNGISAEVSNIKQPWEEGLNFFLKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLED
INWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRFLYKALVTYSERSLAKKAGF
RWNNPAEGAWARKLTVEEANSLDFKVQIIN

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 30969; Mature: 30969

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSNKKVLNQLDFLKNEITNNDLEIKKTLNQSISNSKVRTQNKKIEKILILDTETTGLD
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEEEECCCCCCC
ENKDEIIEIGCILFHVTSKSVLSQVSFLFPVSSNEAEHVNGISAEVSNIKQPWEEGLNFF
CCHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
LKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLEDINWSFQKNLKNRPSVTDLAL
HHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCHHHEEE
SFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRFLYKALVTYSERSLAKKAGF
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
RWNNPAEGAWARKLTVEEANSLDFKVQIIN
CCCCCCCCCCEEEEECCCCCCCEEEEEEEC
>Mature Secondary Structure
MEPSNKKVLNQLDFLKNEITNNDLEIKKTLNQSISNSKVRTQNKKIEKILILDTETTGLD
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEEEECCCCCCC
ENKDEIIEIGCILFHVTSKSVLSQVSFLFPVSSNEAEHVNGISAEVSNIKQPWEEGLNFF
CCHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
LKLVDCADLIVAHNVEFDKKWFGKGRLPNLEKNWICSLEDINWSFQKNLKNRPSVTDLAL
HHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCHHHEEE
SFSIPVWSLHRALSDCFYISEVFKKCENLEELLIKATEPRFLYKALVTYSERSLAKKAGF
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
RWNNPAEGAWARKLTVEEANSLDFKVQIIN
CCCCCCCCCCEEEEECCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA