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The map label for this gene is tdcF [C]

Identifier: 123965857

GI number: 123965857

Start: 556560

End: 556952

Strand: Reverse

Name: tdcF [C]

Synonym: P9515_06221

Alternate gene names: 123965857

Gene position: 556952-556560 (Counterclockwise)

Preceding gene: 123965858

Following gene: 123965856

Centisome position: 32.68

GC content: 32.82

Gene sequence:

>393_bases
ATGTCCTCATCAAAAGTAATTAAGACTTCTAATGCCCCAGACCCAGTTGGTCCTTATAACCAAGCTATAAAAGCAGGAAA
TTTTATTTATTGTTCTGGTCAAATTGCTATTGATCCAGTTTCAAATGAAATAAATTGCCTTGGGAATATCGAAAAGGAGA
CTACTCAAGTTTTAAAAAATCTTCTAGCTGTTCTTAATTCCGGAGGAGCCACAGCGGAAGATGTTATTAAAACAACTATA
TATCTAACTGATTTAAAAAATTTTAAAACTGTCAATGAAATATATAGTGACTTCTTTAAGGTAAAGAACCCCCCAGCAAG
AGCTTGTGTTGAAGTTTCTTCTTTACCTAAAGGCGTTTTAATTGAAATAGATTGTGTCGCATACTTAGATTAA

Upstream 100 bases:

>100_bases
AATTAATCTGTTTTTAAGAGCAGATAATTTAAAAAGATTTTCTTACTTAAGAGCAAATAAAGATACATGGGTTTAAATTT
ATAGAAACATCTTTCATCAA

Downstream 100 bases:

>100_bases
TTTATAATTATTTAGAAATTTGAAATAAGAGCCAATTCTGCACCATATTTGTATAGATTATTAATAACAATTCTTCTATG
ATCTATGACAGCAGCAAAGC

Product: YjgF family translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MSSSKVIKTSNAPDPVGPYNQAIKAGNFIYCSGQIAIDPVSNEINCLGNIEKETTQVLKNLLAVLNSGGATAEDVIKTTI
YLTDLKNFKTVNEIYSDFFKVKNPPARACVEVSSLPKGVLIEIDCVAYLD

Sequences:

>Translated_130_residues
MSSSKVIKTSNAPDPVGPYNQAIKAGNFIYCSGQIAIDPVSNEINCLGNIEKETTQVLKNLLAVLNSGGATAEDVIKTTI
YLTDLKNFKTVNEIYSDFFKVKNPPARACVEVSSLPKGVLIEIDCVAYLD
>Mature_129_residues
SSSKVIKTSNAPDPVGPYNQAIKAGNFIYCSGQIAIDPVSNEINCLGNIEKETTQVLKNLLAVLNSGGATAEDVIKTTIY
LTDLKNFKTVNEIYSDFFKVKNPPARACVEVSSLPKGVLIEIDCVAYLD

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=129, Percent_Identity=46.5116279069767, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=42.8571428571429, Blast_Score=106, Evalue=4e-25,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=37.6, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=30.6451612903226, Blast_Score=72, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=43.6507936507937, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=43.6507936507937, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=43.6507936507937, Blast_Score=113, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=35.5371900826446, Blast_Score=88, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=34.2857142857143, Blast_Score=73, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=41.4634146341463, Blast_Score=97, Evalue=4e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14030; Mature: 13899

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSKVIKTSNAPDPVGPYNQAIKAGNFIYCSGQIAIDPVSNEINCLGNIEKETTQVLKN
CCCCCEEECCCCCCCCCCHHHHHHCCCEEEECCEEEEECCCCCCEECCCCCHHHHHHHHH
LLAVLNSGGATAEDVIKTTIYLTDLKNFKTVNEIYSDFFKVKNPPARACVEVSSLPKGVL
HHHHHCCCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCHHHHEECCCCCCCEE
IEIDCVAYLD
EEEEEEEECC
>Mature Secondary Structure 
SSSKVIKTSNAPDPVGPYNQAIKAGNFIYCSGQIAIDPVSNEINCLGNIEKETTQVLKN
CCCCEEECCCCCCCCCCHHHHHHCCCEEEECCEEEEECCCCCCEECCCCCHHHHHHHHH
LLAVLNSGGATAEDVIKTTIYLTDLKNFKTVNEIYSDFFKVKNPPARACVEVSSLPKGVL
HHHHHCCCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCHHHHEECCCCCCCEE
IEIDCVAYLD
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]