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The map label for this gene is yciC [H]

Identifier: 123965789

GI number: 123965789

Start: 494232

End: 495305

Strand: Reverse

Name: yciC [H]

Synonym: P9515_05541

Alternate gene names: 123965789

Gene position: 495305-494232 (Counterclockwise)

Preceding gene: 123965790

Following gene: 123965788

Centisome position: 29.06

GC content: 30.45

Gene sequence:

>1074_bases
ATGATTGAAAAATTGATACCTGTAACCATTATTAGTGGATTCTTGGGATCAGGGAAAACTACGCTTCTTAATCATATTTT
AAAAAATCAAGTTGGTATTAAAACTGCTGTTTTAGTTAATGAATTTGGAGAGATAGGAATTGATAATGAATTAATTATCA
AAACTGCTGAAGATATGATTGAGTTAAATAACGGATGCATTTGTTGCACAATAAATGGAGAATTATTAAACACTGTTTCT
AAGATATTAGAAAGGCCTGAAAAAATAGATTATTTAATTGTTGAGACTACTGGCCTTGCAGATCCACTACCCGTGGCAAT
GACTTTTGCAGGAGGGGATCTAAGAGAAAAAGTAAGATTAGATTCTATCATTACTTTAATTGACGCCGATAACTTTGATT
TTGATATAAAAAATTCTAGTGTTGCTTATTCTCAAATTTTATACGGTGATATCTTACTACTGAATAAATGCGATTTAGTA
ACTGATGCACAGTTAAATAAGATTGAAAAATACATTAATGGGATAAAAAAAGAGCCAAGAATTTTGAGGGCGATAAATAG
TGAAGTGGGATTGCAAACGATAATAAGTGTGGGACTTTTTGAAACAGATACTTTTCAATTTAATGAGAAGATGAAGAAAA
ATATAGATTTGAATGATCACTCTTCCCACTCTCATGATCACTCTTCCCACTCTCATGATCACTCTTCCCATTCTCATGAT
CACTCTTCCCATTCTCATGATCACTCTTCCCATTCTCATGATTTAATTAATAATATAGAGGGATTTACTTCAGTTTCTTT
TAAGACGATTGAACCATTTTCTTTAAGGAAGTTTCAAAATTTCTTAGATAATCAAATCTCTCAAAATGTTTTTAGAGCAA
AAGGAATTTTATGGTTTGTAGAAAGCGAACGAAAACACATTTTTCATTTATCAGGTAAACGTTTTTCACTTGACGATTAT
GAGTGGGAAAATGAAAAATTAAATAAAATTGTTCTCATAGGAAAAAATTTAGATCATCAAACTATTAAGAATCAACTTGA
TTCTTGTAGATTTAATTCGAGAGACGAAGCATAA

Upstream 100 bases:

>100_bases
TTACAAATTTAGATCAGAAAATTGCTTCGGAAATTAATGAAATTTTCGAAAAATAATTTAATATAGAATTACTTTATTCT
TTCAAAAGATCATAATTTAA

Downstream 100 bases:

>100_bases
TAAAGTTTTAATTTAATTTTTGAAAATTATTATTAAACATACAAAAAAATTATTAACCTATTTAAAACCTTTAGATATTG
CATCTTTAATTGTTGCAGTT

Product: G3E family GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MIEKLIPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNELIIKTAEDMIELNNGCICCTINGELLNTVS
KILERPEKIDYLIVETTGLADPLPVAMTFAGGDLREKVRLDSIITLIDADNFDFDIKNSSVAYSQILYGDILLLNKCDLV
TDAQLNKIEKYINGIKKEPRILRAINSEVGLQTIISVGLFETDTFQFNEKMKKNIDLNDHSSHSHDHSSHSHDHSSHSHD
HSSHSHDHSSHSHDLINNIEGFTSVSFKTIEPFSLRKFQNFLDNQISQNVFRAKGILWFVESERKHIFHLSGKRFSLDDY
EWENEKLNKIVLIGKNLDHQTIKNQLDSCRFNSRDEA

Sequences:

>Translated_357_residues
MIEKLIPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNELIIKTAEDMIELNNGCICCTINGELLNTVS
KILERPEKIDYLIVETTGLADPLPVAMTFAGGDLREKVRLDSIITLIDADNFDFDIKNSSVAYSQILYGDILLLNKCDLV
TDAQLNKIEKYINGIKKEPRILRAINSEVGLQTIISVGLFETDTFQFNEKMKKNIDLNDHSSHSHDHSSHSHDHSSHSHD
HSSHSHDHSSHSHDLINNIEGFTSVSFKTIEPFSLRKFQNFLDNQISQNVFRAKGILWFVESERKHIFHLSGKRFSLDDY
EWENEKLNKIVLIGKNLDHQTIKNQLDSCRFNSRDEA
>Mature_357_residues
MIEKLIPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNELIIKTAEDMIELNNGCICCTINGELLNTVS
KILERPEKIDYLIVETTGLADPLPVAMTFAGGDLREKVRLDSIITLIDADNFDFDIKNSSVAYSQILYGDILLLNKCDLV
TDAQLNKIEKYINGIKKEPRILRAINSEVGLQTIISVGLFETDTFQFNEKMKKNIDLNDHSSHSHDHSSHSHDHSSHSHD
HSSHSHDHSSHSHDLINNIEGFTSVSFKTIEPFSLRKFQNFLDNQISQNVFRAKGILWFVESERKHIFHLSGKRFSLDDY
EWENEKLNKIVLIGKNLDHQTIKNQLDSCRFNSRDEA

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=358, Percent_Identity=29.3296089385475, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI33469141, Length=358, Percent_Identity=29.3296089385475, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI148727351, Length=358, Percent_Identity=29.3296089385475, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI223941779, Length=358, Percent_Identity=29.3296089385475, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI146231952, Length=358, Percent_Identity=29.0502793296089, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI223941776, Length=348, Percent_Identity=27.8735632183908, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI119120938, Length=130, Percent_Identity=41.5384615384615, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI87082430, Length=360, Percent_Identity=29.1666666666667, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1788499, Length=223, Percent_Identity=30.0448430493274, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324356, Length=182, Percent_Identity=35.1648351648352, Blast_Score=105, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 40449; Mature: 40449

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKLIPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNELIIKTAEDMI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHH
ELNNGCICCTINGELLNTVSKILERPEKIDYLIVETTGLADPLPVAMTFAGGDLREKVRL
HHCCCEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHH
DSIITLIDADNFDFDIKNSSVAYSQILYGDILLLNKCDLVTDAQLNKIEKYINGIKKEPR
HHEEEEEECCCCCEEECCCCHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHCCCCH
ILRAINSEVGLQTIISVGLFETDTFQFNEKMKKNIDLNDHSSHSHDHSSHSHDHSSHSHD
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
HSSHSHDHSSHSHDLINNIEGFTSVSFKTIEPFSLRKFQNFLDNQISQNVFRAKGILWFV
CCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
ESERKHIFHLSGKRFSLDDYEWENEKLNKIVLIGKNLDHQTIKNQLDSCRFNSRDEA
ECCCCEEEEECCCEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIEKLIPVTIISGFLGSGKTTLLNHILKNQVGIKTAVLVNEFGEIGIDNELIIKTAEDMI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHH
ELNNGCICCTINGELLNTVSKILERPEKIDYLIVETTGLADPLPVAMTFAGGDLREKVRL
HHCCCEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHH
DSIITLIDADNFDFDIKNSSVAYSQILYGDILLLNKCDLVTDAQLNKIEKYINGIKKEPR
HHEEEEEECCCCCEEECCCCHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHCCCCH
ILRAINSEVGLQTIISVGLFETDTFQFNEKMKKNIDLNDHSSHSHDHSSHSHDHSSHSHD
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
HSSHSHDHSSHSHDLINNIEGFTSVSFKTIEPFSLRKFQNFLDNQISQNVFRAKGILWFV
CCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
ESERKHIFHLSGKRFSLDDYEWENEKLNKIVLIGKNLDHQTIKNQLDSCRFNSRDEA
ECCCCEEEEECCCEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]