| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
Click here to switch to the map view.
The map label for this gene is yloA [H]
Identifier: 123965765
GI number: 123965765
Start: 473274
End: 474974
Strand: Reverse
Name: yloA [H]
Synonym: P9515_05301
Alternate gene names: 123965765
Gene position: 474974-473274 (Counterclockwise)
Preceding gene: 123965767
Following gene: 123965764
Centisome position: 27.87
GC content: 28.57
Gene sequence:
>1701_bases ATGGATATTACATCTATAAAATCTGTGTTGCATGAATTATCAGAAGAAATTCTACCCTCAAGGTTTGAAACCGCTCAACA ACCCGAACCTAATATAATTCAATTCTGTTTAAGAGGAATAAATAGCCAAACTTGGATAGAAGTATCTTGGAGCAGTGATT CTGCACGAATACTTAAAATAAATAGGCCTGAAAAATTAGGAGCAGAAAGTACACTCTCAAAACAATTGAGATTTGGCTTG AAATATATGGCTTTAGTAACGATAAAGCAAGATAAATTTGAGAGGGTTATTAAATTTGGATTTGCGAAAAAGCCTGGAGA TGAGATAAACAAGTACTTAATTTTTGAACTAATGGGTAAACATAGTAATATTTTTTACTTAGATAATAATCAAAAAATAA TTGCAGTTGGCAAACAAATAAACTCTAATCAATCTAGCTTTCGTACCGTTTCTACAGGCTCTATCTATTCAGAGCCTCCC AAAAACATGAAAAAGGAGCCCAGTCCAGACGAATCTTATGAAAATTGGAAAGAGTCTATATCTTCAGTTCCAGAAACTCT TAAATACTGCTTAATAAATACATATCAAGGTGTAAGTCCAATATTAACGAAGCAACTTGAGGCTTTTAGTAATCTAGGTA GTTCAGAAATAATGAATAAAAATATTGATTTCATAAGTGAAGTCAACTTAAAAAAGATATACCAAAGTTGGAAAATATGG ATTGATAGGTTTAATAATAACAATTTTAATTTTTCAATTTTTGACAGTTTTTTTTATTCAGTTTGGTTTTTAAAGAGTGA AATAAATAACATCAATAATATTGATGAAATTAATGGATTAGAAAACTATTATGATTTTTATCTAAAACAAAGAAAAATTG ACGCCTTAATAAAAAAAATTGACGGAATAATTTTTAAACAAACAAATCTTGAGAAAAAGAATTTTAATTTGCAATCTGAT CTTTTGATTAACTCCGAAAATTATCAAATATATAAAGAAAAAGCTGACAAAATATTTATGACTCATGAGATACAAAAAAA AGATATTATCAAAGGCCAAAAGCTTTATAAAAAGTCAAAAAAGCTAAAAAGAGCACAAAATTTAATCAAAGAGAGGATTG ATATTTATAAAAACAAGCTTGATAGATTAGAGGAATTTAGTGCTCTAGTGGATAACTTAAATTCTTTAAAAAATGAAAAT CTGACAATTAGAATCAATTTACTGGAAGAAATTAAAGATGAAATTTGTAGAGAGTTTAATGTGAGAACCAGAAATACAAG ATCGCAAAAAAAAGACTTGTCTAGATTAGAGTCAGCCCCAATAGAAATAAATACTCCTAAAGGCTTAAAAATACAAATAG GAAGAAATATGAGGCAAAATGATCTAATAAGTTTTAAGTTTTCAAAAAAAGGGGATCTTTGGTTCCATGCACAAGAATCA CCTGGAAGTCATGTTGTTTTAAAGTCCTCATCTCAAAAACCTTCAGATGAAGATATTCAAATATCCGCAGATTTAGCAGC TTTATTTAGTAAAGCAAAAATGAATATTAAAGTCCCTATAAGTCTTGTAAATATAAAAGACCTCCAAAAAATAACTAAAG GCGGTCCTGGCTGTGTTTCGTTCCACAATGTAGAAATTATTTGGGGTAATCCTACAAGAGGAAAAGATTACATTAAAAAA AATCTTAAAAGACTAATTTAG
Upstream 100 bases:
>100_bases ATAATGAGTTTTTTTAAATTTTTCATATTAAAATTTTTACAGTAAAGTGGGTTTTGGTGATTAACTACAAGAAATAATGC AAAAAGGTGTACCTCAGATT
Downstream 100 bases:
>100_bases CCTATAATTAAAAAAAATTATTTTTTAAATGTTAGATTTTTTACTAGGAACTCACGAATTTTTAGGTAATCATAGCTTTC CAGAGTTTATTGTAGGGTAT
Product: secreted protein MPB70 precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 566; Mature: 566
Protein sequence:
>566_residues MDITSIKSVLHELSEEILPSRFETAQQPEPNIIQFCLRGINSQTWIEVSWSSDSARILKINRPEKLGAESTLSKQLRFGL KYMALVTIKQDKFERVIKFGFAKKPGDEINKYLIFELMGKHSNIFYLDNNQKIIAVGKQINSNQSSFRTVSTGSIYSEPP KNMKKEPSPDESYENWKESISSVPETLKYCLINTYQGVSPILTKQLEAFSNLGSSEIMNKNIDFISEVNLKKIYQSWKIW IDRFNNNNFNFSIFDSFFYSVWFLKSEINNINNIDEINGLENYYDFYLKQRKIDALIKKIDGIIFKQTNLEKKNFNLQSD LLINSENYQIYKEKADKIFMTHEIQKKDIIKGQKLYKKSKKLKRAQNLIKERIDIYKNKLDRLEEFSALVDNLNSLKNEN LTIRINLLEEIKDEICREFNVRTRNTRSQKKDLSRLESAPIEINTPKGLKIQIGRNMRQNDLISFKFSKKGDLWFHAQES PGSHVVLKSSSQKPSDEDIQISADLAALFSKAKMNIKVPISLVNIKDLQKITKGGPGCVSFHNVEIIWGNPTRGKDYIKK NLKRLI
Sequences:
>Translated_566_residues MDITSIKSVLHELSEEILPSRFETAQQPEPNIIQFCLRGINSQTWIEVSWSSDSARILKINRPEKLGAESTLSKQLRFGL KYMALVTIKQDKFERVIKFGFAKKPGDEINKYLIFELMGKHSNIFYLDNNQKIIAVGKQINSNQSSFRTVSTGSIYSEPP KNMKKEPSPDESYENWKESISSVPETLKYCLINTYQGVSPILTKQLEAFSNLGSSEIMNKNIDFISEVNLKKIYQSWKIW IDRFNNNNFNFSIFDSFFYSVWFLKSEINNINNIDEINGLENYYDFYLKQRKIDALIKKIDGIIFKQTNLEKKNFNLQSD LLINSENYQIYKEKADKIFMTHEIQKKDIIKGQKLYKKSKKLKRAQNLIKERIDIYKNKLDRLEEFSALVDNLNSLKNEN LTIRINLLEEIKDEICREFNVRTRNTRSQKKDLSRLESAPIEINTPKGLKIQIGRNMRQNDLISFKFSKKGDLWFHAQES PGSHVVLKSSSQKPSDEDIQISADLAALFSKAKMNIKVPISLVNIKDLQKITKGGPGCVSFHNVEIIWGNPTRGKDYIKK NLKRLI >Mature_566_residues MDITSIKSVLHELSEEILPSRFETAQQPEPNIIQFCLRGINSQTWIEVSWSSDSARILKINRPEKLGAESTLSKQLRFGL KYMALVTIKQDKFERVIKFGFAKKPGDEINKYLIFELMGKHSNIFYLDNNQKIIAVGKQINSNQSSFRTVSTGSIYSEPP KNMKKEPSPDESYENWKESISSVPETLKYCLINTYQGVSPILTKQLEAFSNLGSSEIMNKNIDFISEVNLKKIYQSWKIW IDRFNNNNFNFSIFDSFFYSVWFLKSEINNINNIDEINGLENYYDFYLKQRKIDALIKKIDGIIFKQTNLEKKNFNLQSD LLINSENYQIYKEKADKIFMTHEIQKKDIIKGQKLYKKSKKLKRAQNLIKERIDIYKNKLDRLEEFSALVDNLNSLKNEN LTIRINLLEEIKDEICREFNVRTRNTRSQKKDLSRLESAPIEINTPKGLKIQIGRNMRQNDLISFKFSKKGDLWFHAQES PGSHVVLKSSSQKPSDEDIQISADLAALFSKAKMNIKVPISLVNIKDLQKITKGGPGCVSFHNVEIIWGNPTRGKDYIKK NLKRLI
Specific function: Unknown
COG id: COG1293
COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SDCCAG1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008532 - InterPro: IPR008616 [H]
Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]
EC number: NA
Molecular weight: Translated: 65741; Mature: 65741
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDITSIKSVLHELSEEILPSRFETAQQPEPNIIQFCLRGINSQTWIEVSWSSDSARILKI CCHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEE NRPEKLGAESTLSKQLRFGLKYMALVTIKQDKFERVIKFGFAKKPGDEINKYLIFELMGK CCCHHCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC HSNIFYLDNNQKIIAVGKQINSNQSSFRTVSTGSIYSEPPKNMKKEPSPDESYENWKESI CCCEEEEECCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH SSVPETLKYCLINTYQGVSPILTKQLEAFSNLGSSEIMNKNIDFISEVNLKKIYQSWKIW HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHCCHHHHHHHHHHH IDRFNNNNFNFSIFDSFFYSVWFLKSEINNINNIDEINGLENYYDFYLKQRKIDALIKKI HHEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH DGIIFKQTNLEKKNFNLQSDLLINSENYQIYKEKADKIFMTHEIQKKDIIKGQKLYKKSK CCEEEEECCCCHHCCCCCCCEEECCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHH KLKRAQNLIKERIDIYKNKLDRLEEFSALVDNLNSLKNENLTIRINLLEEIKDEICREFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCC VRTRNTRSQKKDLSRLESAPIEINTPKGLKIQIGRNMRQNDLISFKFSKKGDLWFHAQES CCCCCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCC PGSHVVLKSSSQKPSDEDIQISADLAALFSKAKMNIKVPISLVNIKDLQKITKGGPGCVS CCCEEEEECCCCCCCCCCEEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHHHCCCCCEEE FHNVEIIWGNPTRGKDYIKKNLKRLI EEEEEEEECCCCCCHHHHHHHHHHCC >Mature Secondary Structure MDITSIKSVLHELSEEILPSRFETAQQPEPNIIQFCLRGINSQTWIEVSWSSDSARILKI CCHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEE NRPEKLGAESTLSKQLRFGLKYMALVTIKQDKFERVIKFGFAKKPGDEINKYLIFELMGK CCCHHCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC HSNIFYLDNNQKIIAVGKQINSNQSSFRTVSTGSIYSEPPKNMKKEPSPDESYENWKESI CCCEEEEECCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH SSVPETLKYCLINTYQGVSPILTKQLEAFSNLGSSEIMNKNIDFISEVNLKKIYQSWKIW HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHCCHHHHHHHHHHH IDRFNNNNFNFSIFDSFFYSVWFLKSEINNINNIDEINGLENYYDFYLKQRKIDALIKKI HHEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH DGIIFKQTNLEKKNFNLQSDLLINSENYQIYKEKADKIFMTHEIQKKDIIKGQKLYKKSK CCEEEEECCCCHHCCCCCCCEEECCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHH KLKRAQNLIKERIDIYKNKLDRLEEFSALVDNLNSLKNENLTIRINLLEEIKDEICREFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCC VRTRNTRSQKKDLSRLESAPIEINTPKGLKIQIGRNMRQNDLISFKFSKKGDLWFHAQES CCCCCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCC PGSHVVLKSSSQKPSDEDIQISADLAALFSKAKMNIKVPISLVNIKDLQKITKGGPGCVS CCCEEEEECCCCCCCCCCEEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHHHCCCCCEEE FHNVEIIWGNPTRGKDYIKKNLKRLI EEEEEEEECCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 9534248 [H]