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The map label for this gene is nifU [H]

Identifier: 123965714

GI number: 123965714

Start: 427065

End: 427310

Strand: Reverse

Name: nifU [H]

Synonym: P9515_04791

Alternate gene names: 123965714

Gene position: 427310-427065 (Counterclockwise)

Preceding gene: 123965718

Following gene: 123965712

Centisome position: 25.07

GC content: 33.74

Gene sequence:

>246_bases
ATGAGTACTGAAACATTACCACTCACAAACGAGAATGTAGAAAAAGTTTTAGATGAACTAAGACCATTCTTAATTTCAGA
TGGAGGAAATGTTGAAATAGCGGAAATTGATGGACCCATTGTTAAAGTAAGACTTCAAGGTGCATGTGGAAGTTGCCCAA
GCAGTACTATGACATTAAAAATGGGAATAGAAAGAAAATTAAAAGAAATGATTCCTGAGATAAGCGAAGTTGTCCAAGTT
TTATAA

Upstream 100 bases:

>100_bases
TTTTTTTATCAGAAAATTTTTTTGAAGTCACAACAGAAAACTTATTTTTTGCAATAAATCAAATTTCTTTCTAGTCTAAT
CATAAGGATAACTAAAAATC

Downstream 100 bases:

>100_bases
GCTATTTACCAAAAATTTTTATGACTCTTTGCCTATTTCCTTCATTAATGAAGTTTTATAATCTAAGCAATTTATAGGGA
GACCTTGACCTATAGCAATT

Product: NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MSTETLPLTNENVEKVLDELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLKEMIPEISEVVQV
L

Sequences:

>Translated_81_residues
MSTETLPLTNENVEKVLDELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLKEMIPEISEVVQV
L
>Mature_80_residues
STETLPLTNENVEKVLDELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLKEMIPEISEVVQVL

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17541876, Length=61, Percent_Identity=44.2622950819672, Blast_Score=63, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322811, Length=75, Percent_Identity=42.6666666666667, Blast_Score=63, Evalue=7e-12,
Organism=Drosophila melanogaster, GI45551492, Length=70, Percent_Identity=41.4285714285714, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24643765, Length=70, Percent_Identity=41.4285714285714, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45556188, Length=70, Percent_Identity=41.4285714285714, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001075
- ProDom:   PD002830 [H]

Pfam domain/function: PF01106 NifU [H]

EC number: NA

Molecular weight: Translated: 8842; Mature: 8711

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTETLPLTNENVEKVLDELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLK
CCCCCCCCCCCCHHHHHHHHCCEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE
MGIERKLKEMIPEISEVVQVL
CCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
STETLPLTNENVEKVLDELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLK
CCCCCCCCCCCHHHHHHHHCCEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE
MGIERKLKEMIPEISEVVQVL
CCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8424961 [H]