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The map label for this gene is lrtA [H]

Identifier: 123965697

GI number: 123965697

Start: 410421

End: 411005

Strand: Reverse

Name: lrtA [H]

Synonym: P9515_04621

Alternate gene names: 123965697

Gene position: 411005-410421 (Counterclockwise)

Preceding gene: 123965703

Following gene: 123965696

Centisome position: 24.12

GC content: 26.15

Gene sequence:

>585_bases
ATGAAAATTTTAATCCACGGGAAGAATATTGAACTTACAGGTGCATTGAAAGAATATACCGAGGCAAAGATAGAAAAAGC
AACTCATCACTACAAGGATATCGTTAAAGAAGCAGATATACATCTTTCAATCGAAAAGAATCCAAGACTTTCATACCAAA
CAGCTGAAGTTACAATTTTTGCTAGTGGTACCATTATTAGAGCTGAAGAAAAAACAGAGAATCTATATTCTAGTATTGAT
CTAGTTTCAAATAAACTTTGTAGAAAATTACGCAAATATAAAGAAAGACACTATAAAAATTTAAATTATAATCTTGAAAA
AAATAAACATTCTTTTACTAATACAAATGAACACTTAGATTCTATAGATAAAAATATATTTAATGATAAAAGAGAGGCAA
AATTACCTGAACCATCTATTAAAAATAAATATTTTGAAATGATTCCTATTTCTTTGGAAGAGGCTAGAAAACAACTAGAT
TTAATAGATCATGATTTTTATGTTTTTAGAAATAAGAAAAATAATGAACTACAAGTTATCTATAAAAGAAAACATGGTGG
TTATGGTTTAATCCAGTCTAAATAA

Upstream 100 bases:

>100_bases
TCACAAAAAGATGAAATTTTATCAGGTTGTTTAATTATTGATGTTCTATTAATCATATGTAAGTAGATTTAGTAAGTATG
AACATATTTTTAGATTTATT

Downstream 100 bases:

>100_bases
TAAAAAATGTTTAATATCGATTATGAATTAAATGAAAAAATACATGCGATTATAATTAATCCTTATTTATCTTTGGAAGA
ATTAAATGCGAACTGCGCTT

Product: light repressed protein A-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSYQTAEVTIFASGTIIRAEEKTENLYSSID
LVSNKLCRKLRKYKERHYKNLNYNLEKNKHSFTNTNEHLDSIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLD
LIDHDFYVFRNKKNNELQVIYKRKHGGYGLIQSK

Sequences:

>Translated_194_residues
MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSYQTAEVTIFASGTIIRAEEKTENLYSSID
LVSNKLCRKLRKYKERHYKNLNYNLEKNKHSFTNTNEHLDSIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLD
LIDHDFYVFRNKKNNELQVIYKRKHGGYGLIQSK
>Mature_194_residues
MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSYQTAEVTIFASGTIIRAEEKTENLYSSID
LVSNKLCRKLRKYKERHYKNLNYNLEKNKHSFTNTNEHLDSIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLD
LIDHDFYVFRNKKNNELQVIYKRKHGGYGLIQSK

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 22911; Mature: 22911

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSYQTAEVTIF
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEEE
ASGTIIRAEEKTENLYSSIDLVSNKLCRKLRKYKERHYKNLNYNLEKNKHSFTNTNEHLD
ECCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHH
SIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLDLIDHDFYVFRNKKNNELQVI
HHHHHHHCCCHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCEEEE
YKRKHGGYGLIQSK
EEECCCCCEEEECC
>Mature Secondary Structure
MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRLSYQTAEVTIF
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEEE
ASGTIIRAEEKTENLYSSIDLVSNKLCRKLRKYKERHYKNLNYNLEKNKHSFTNTNEHLD
ECCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHH
SIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLDLIDHDFYVFRNKKNNELQVI
HHHHHHHCCCHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCEEEE
YKRKHGGYGLIQSK
EEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]