Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 123965696

GI number: 123965696

Start: 409755

End: 410414

Strand: Reverse

Name: deoC [H]

Synonym: P9515_04611

Alternate gene names: 123965696

Gene position: 410414-409755 (Counterclockwise)

Preceding gene: 123965697

Following gene: 123965695

Centisome position: 24.08

GC content: 25.61

Gene sequence:

>660_bases
ATGTTTAATATCGATTATGAATTAAATGAAAAAATACATGCGATTATAATTAATCCTTATTTATCTTTGGAAGAATTAAA
TGCGAACTGCGCTTTAATTCAAAAATACAATATTAAAAATGTTTCTACATCCCTTAACTTTTTAAGTCATATAAAAAATG
TATTAGGAAATTATAAATTAAATATAAATTCTCTTATTTCTTATCCATTTGCTGATTTACCATTTGAATTTATTGATGAA
TTTGTTTGTTATGCTCAAGACGCCGGTGCAACAGGAATAGAATACACTCCTAATTTTCTTAATCTTTCTAAAAATAATTT
AAATAATTTCGCGAGTGAAATTGAGAGTATTAATGCTTCCGAATTAAAAGTCACCATCATCATAAATAAAAGTAAATTAG
ACAAAGAACTTTTTGAAAAAGCTATAAAAATTTCTCTAGAACTAGGTATAACAAATTTTCAATTTGGAGATGGTTTTGGA
CCTGCTATTTCTAATGTTGATATAGTTGAAATACTAAAATTTGTAGGTATCCAGAATTCTATAAAAGTGGTAGGAGGTAT
CAAAACCCTATCACAGGTTATTGACTTTTTTGATTTAGGTATAGATTGTATTGGAACGTCAAATTTTGATGAGATATTTA
AAGAAATTAAACGGATATAA

Upstream 100 bases:

>100_bases
TGATTTTTATGTTTTTAGAAATAAGAAAAATAATGAACTACAAGTTATCTATAAAAGAAAACATGGTGGTTATGGTTTAA
TCCAGTCTAAATAATAAAAA

Downstream 100 bases:

>100_bases
ATGTTAGGCGAAAGTAGATTAAAAGGTCTCTGTATAAAAGCAAGTCCCTTAGGTGAAAGTGGAAGATTAATAACTGTTCT
TACAGATGAACAAGGTATTA

Product: putative deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MFNIDYELNEKIHAIIINPYLSLEELNANCALIQKYNIKNVSTSLNFLSHIKNVLGNYKLNINSLISYPFADLPFEFIDE
FVCYAQDAGATGIEYTPNFLNLSKNNLNNFASEIESINASELKVTIIINKSKLDKELFEKAIKISLELGITNFQFGDGFG
PAISNVDIVEILKFVGIQNSIKVVGGIKTLSQVIDFFDLGIDCIGTSNFDEIFKEIKRI

Sequences:

>Translated_219_residues
MFNIDYELNEKIHAIIINPYLSLEELNANCALIQKYNIKNVSTSLNFLSHIKNVLGNYKLNINSLISYPFADLPFEFIDE
FVCYAQDAGATGIEYTPNFLNLSKNNLNNFASEIESINASELKVTIIINKSKLDKELFEKAIKISLELGITNFQFGDGFG
PAISNVDIVEILKFVGIQNSIKVVGGIKTLSQVIDFFDLGIDCIGTSNFDEIFKEIKRI
>Mature_219_residues
MFNIDYELNEKIHAIIINPYLSLEELNANCALIQKYNIKNVSTSLNFLSHIKNVLGNYKLNINSLISYPFADLPFEFIDE
FVCYAQDAGATGIEYTPNFLNLSKNNLNNFASEIESINASELKVTIIINKSKLDKELFEKAIKISLELGITNFQFGDGFG
PAISNVDIVEILKFVGIQNSIKVVGGIKTLSQVIDFFDLGIDCIGTSNFDEIFKEIKRI

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24579; Mature: 24579

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNIDYELNEKIHAIIINPYLSLEELNANCALIQKYNIKNVSTSLNFLSHIKNVLGNYKL
CCCCCCCCCCCEEEEEECCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEE
NINSLISYPFADLPFEFIDEFVCYAQDAGATGIEYTPNFLNLSKNNLNNFASEIESINAS
CHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCHHCCCHHHHHHHHHHHHCCCCC
ELKVTIIINKSKLDKELFEKAIKISLELGITNFQFGDGFGPAISNVDIVEILKFVGIQNS
CEEEEEEEECCHHHHHHHHHHHHEEEEECCEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
IKVVGGIKTLSQVIDFFDLGIDCIGTSNFDEIFKEIKRI
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MFNIDYELNEKIHAIIINPYLSLEELNANCALIQKYNIKNVSTSLNFLSHIKNVLGNYKL
CCCCCCCCCCCEEEEEECCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEE
NINSLISYPFADLPFEFIDEFVCYAQDAGATGIEYTPNFLNLSKNNLNNFASEIESINAS
CHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCHHCCCHHHHHHHHHHHHCCCCC
ELKVTIIINKSKLDKELFEKAIKISLELGITNFQFGDGFGPAISNVDIVEILKFVGIQNS
CEEEEEEEECCHHHHHHHHHHHHEEEEECCEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
IKVVGGIKTLSQVIDFFDLGIDCIGTSNFDEIFKEIKRI
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA