| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121999193
Identifier: 121999193
GI number: 121999193
Start: 2650048
End: 2650689
Strand: Reverse
Name: 121999193
Synonym: Hhal_2415
Alternate gene names: NA
Gene position: 2650689-2650048 (Counterclockwise)
Preceding gene: 121999194
Following gene: 121999192
Centisome position: 98.96
GC content: 71.18
Gene sequence:
>642_bases ATGGCGCAGAAGAGCACCAAGCCCCGGGGCAACACGCGCAGCAAGGCCCGCACCCCCGCCCGCAGCCGCGGTGGCGGGGC CCAGGCACGGCGAACCGAGCGGCGCGCCGTGCCCGGCTTCGTGTGGCTGCTGATCGGCGGGGTGATCGGTGCCGTCGCGC TGCTCTTCGTCCAGTACCAGCAGGGGCGCGAGGATGCCGCCCCGGTGGATCCGGCTGCCGAGATGGAGCCGGAGCCGGAG GACGAGCCGGCGGCCGAGGAGAGCGAGCGCAGCTACGACTTCTACGAACTGCTGATGCAGGATGAGGTCACCGTCCCCGA GGAGGATCTGGGCCGCGCCGATGAGCGGCGCACCCAGGACGAGGAGGAGGACGAGATCTCCCGCGCCGCCACCTTCGAGG AGGGGCGCAGCTACCTCCTTCAGGCCGGCTCATTCCAACGGCACGACGACGCCGAGAGCATGCGCGCCACCCTGGCCCTG GTCGGCCTGCCGGCGCAGATCCACACCGTCGAGCTGGATGAGGGCGAGGAGTGGCACCGCGTCCGGGTCGGCCCGTTCGA GGATAGCGATCGGCTGGAGGAGGCGCGGACGCGCATGGAGGACAACGACATCCAGCCGCTGATGCTGCGGCAGGATGGCT AA
Upstream 100 bases:
>100_bases TGACGCCCGCCTGACGCTGGTGCAGGCCACCCGGCAGGTCCTGGCCAACGGCCTGGGGCTGCTCGGTGTCGACGCCCCGC AGAGCATGTAGCGACGGACC
Downstream 100 bases:
>100_bases CCCTTCGGGGTTCAGGGATCAGCGTTCAGCGTCGGGCTCGGTGCTGGGCGTTGGATGTTCAGGGTTCAGCGGTTTGGTGC CGGGCCGCTCGGCGGCGGGT
Product: sporulation domain-containing protein
Products: NA
Alternate protein names: Sporulation And Repeat Protein; Sporulation ; Carbamoyl-Phosphate Synthase Small Subunit; Sporulation Related Repeat Family; Sporulation And Repeat Domain Containing Protein; Sporulation Domain Protein
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MAQKSTKPRGNTRSKARTPARSRGGGAQARRTERRAVPGFVWLLIGGVIGAVALLFVQYQQGREDAAPVDPAAEMEPEPE DEPAAEESERSYDFYELLMQDEVTVPEEDLGRADERRTQDEEEDEISRAATFEEGRSYLLQAGSFQRHDDAESMRATLAL VGLPAQIHTVELDEGEEWHRVRVGPFEDSDRLEEARTRMEDNDIQPLMLRQDG
Sequences:
>Translated_213_residues MAQKSTKPRGNTRSKARTPARSRGGGAQARRTERRAVPGFVWLLIGGVIGAVALLFVQYQQGREDAAPVDPAAEMEPEPE DEPAAEESERSYDFYELLMQDEVTVPEEDLGRADERRTQDEEEDEISRAATFEEGRSYLLQAGSFQRHDDAESMRATLAL VGLPAQIHTVELDEGEEWHRVRVGPFEDSDRLEEARTRMEDNDIQPLMLRQDG >Mature_212_residues AQKSTKPRGNTRSKARTPARSRGGGAQARRTERRAVPGFVWLLIGGVIGAVALLFVQYQQGREDAAPVDPAAEMEPEPED EPAAEESERSYDFYELLMQDEVTVPEEDLGRADERRTQDEEEDEISRAATFEEGRSYLLQAGSFQRHDDAESMRATLALV GLPAQIHTVELDEGEEWHRVRVGPFEDSDRLEEARTRMEDNDIQPLMLRQDG
Specific function: Unknown
COG id: COG3087
COG function: function code D; Cell division protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24015; Mature: 23883
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQKSTKPRGNTRSKARTPARSRGGGAQARRTERRAVPGFVWLLIGGVIGAVALLFVQYQ CCCCCCCCCCCCCHHHCCCCHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QGREDAAPVDPAAEMEPEPEDEPAAEESERSYDFYELLMQDEVTVPEEDLGRADERRTQD HCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCHHHHCCCHHHHCCC EEEDEISRAATFEEGRSYLLQAGSFQRHDDAESMRATLALVGLPAQIHTVELDEGEEWHR CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE VRVGPFEDSDRLEEARTRMEDNDIQPLMLRQDG EECCCCCCHHHHHHHHHHHCCCCCCEEEEECCC >Mature Secondary Structure AQKSTKPRGNTRSKARTPARSRGGGAQARRTERRAVPGFVWLLIGGVIGAVALLFVQYQ CCCCCCCCCCCCHHHCCCCHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QGREDAAPVDPAAEMEPEPEDEPAAEESERSYDFYELLMQDEVTVPEEDLGRADERRTQD HCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCHHHHCCCHHHHCCC EEEDEISRAATFEEGRSYLLQAGSFQRHDDAESMRATLALVGLPAQIHTVELDEGEEWHR CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE VRVGPFEDSDRLEEARTRMEDNDIQPLMLRQDG EECCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA