| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999192
Identifier: 121999192
GI number: 121999192
Start: 2649565
End: 2649993
Strand: Reverse
Name: 121999192
Synonym: Hhal_2414
Alternate gene names: NA
Gene position: 2649993-2649565 (Counterclockwise)
Preceding gene: 121999193
Following gene: 121999189
Centisome position: 98.94
GC content: 67.83
Gene sequence:
>429_bases ATGTTCAGGGTTCAGCGGTTTGGTGCCGGGCCGCTCGGCGGCGGGTCGGGCGCCCCGGTCTATTTCTGGAGGAGGGACTT CATGATTGTGTTGCGCAGCATCCTGTTGCTCGCCACCGTCGCCTGCCTGGGGTTTCTGGGCTACACCCTCTACGCCACCG ACGTCTTCGGTGACCCGGCAGGCGTGGCGATGGAGCTGGAGACCCTGATCGACAGCCCCTGGGTGCAGGTGGTGCTGGCC GCCTACTACTTGGGCGTGCTCTGCTTCCTGGCGGCCATCGTCGTGATCGAGAAGCGGCCGGTGCCGCGGATCATCTGGGC CGTGGTCGGCCTGCTGCTGACCTACCCGGCCCTGGTCTTCTGGCTGCTCCTGCGCGGTCTGCCGGAGATGGGCGAGCGCA GCAGCCGCCGTCTGCGCACCCTCGGCTAG
Upstream 100 bases:
>100_bases GGAGGACAACGACATCCAGCCGCTGATGCTGCGGCAGGATGGCTAACCCTTCGGGGTTCAGGGATCAGCGTTCAGCGTCG GGCTCGGTGCTGGGCGTTGG
Downstream 100 bases:
>100_bases GGGCCGCGTTGCGGTCCCCGGGGTCGGCCCGGGGACCGGCGCTCAGTCGGCGCCCAGATCGGTCTTGCGCAGCCGGTAGA GCGCCGAGATGTCCTCATCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MFRVQRFGAGPLGGGSGAPVYFWRRDFMIVLRSILLLATVACLGFLGYTLYATDVFGDPAGVAMELETLIDSPWVQVVLA AYYLGVLCFLAAIVVIEKRPVPRIIWAVVGLLLTYPALVFWLLLRGLPEMGERSSRRLRTLG
Sequences:
>Translated_142_residues MFRVQRFGAGPLGGGSGAPVYFWRRDFMIVLRSILLLATVACLGFLGYTLYATDVFGDPAGVAMELETLIDSPWVQVVLA AYYLGVLCFLAAIVVIEKRPVPRIIWAVVGLLLTYPALVFWLLLRGLPEMGERSSRRLRTLG >Mature_142_residues MFRVQRFGAGPLGGGSGAPVYFWRRDFMIVLRSILLLATVACLGFLGYTLYATDVFGDPAGVAMELETLIDSPWVQVVLA AYYLGVLCFLAAIVVIEKRPVPRIIWAVVGLLLTYPALVFWLLLRGLPEMGERSSRRLRTLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15708; Mature: 15708
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRVQRFGAGPLGGGSGAPVYFWRRDFMIVLRSILLLATVACLGFLGYTLYATDVFGDPA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GVAMELETLIDSPWVQVVLAAYYLGVLCFLAAIVVIEKRPVPRIIWAVVGLLLTYPALVF CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH WLLLRGLPEMGERSSRRLRTLG HHHHHCCCCCCHHHHHHHHCCC >Mature Secondary Structure MFRVQRFGAGPLGGGSGAPVYFWRRDFMIVLRSILLLATVACLGFLGYTLYATDVFGDPA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GVAMELETLIDSPWVQVVLAAYYLGVLCFLAAIVVIEKRPVPRIIWAVVGLLLTYPALVF CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH WLLLRGLPEMGERSSRRLRTLG HHHHHCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA