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The map label for this gene is rimN

Identifier: 121999106

GI number: 121999106

Start: 2554585

End: 2555160

Strand: Reverse

Name: rimN

Synonym: Hhal_2328

Alternate gene names: 121999106

Gene position: 2555160-2554585 (Counterclockwise)

Preceding gene: 121999107

Following gene: 121999105

Centisome position: 95.4

GC content: 74.83

Gene sequence:

>576_bases
ATGAACGAGTGCCCGCCCGGTACCCGTCCATTCCGGGTCCGGCACGCCGCTGCGGAGCTGCGCCAGGGCGGCGTGGTGGC
CTATCCCACCGAGGCGGTCTGGGGGCTGGGCTGCGATCCGCGCAACGCCGACGCCGTGGCGCGCCTGCTGGCGCTGAAGG
GGCGACCGGAACGCCAGGGGCTGATCCTGATTGCCGCCGAGTCGCGACAACTCGCCCGGTACCTGGCACCGTTACCGGCG
GAGTGGGCGGAGACGATCCAGGCCAGTTGGCCGGGGCCGATGACCTGGGTGCTCCCGGCGTCGACGCGGGCCCCGCGCTG
GGTCAGTGGCGGGCGCGACACGCTGGCCGTGCGGGTGACCGCGCACCCGGTGGCAGCCGCCTTGTGCAGCGCCTTCGGGG
GGGCGCTGGTCTCCACCAGTGCCAACCCCTCGGCCCGGCGGCCGGCTCGCAGCGTTGCGGAGGTGCGGCGCTACTTCGGC
ACGCGGATCGACGCGCTGGTACCCGGGCGCCTGGGCGGGCTGGAGCGGCCGACCCCGATCCGGGACGGACGCAGTGGGGC
CTACCTGAGACGATGA

Upstream 100 bases:

>100_bases
CGGCCACGGCGATCCTCACGGCGGCCATCGTCTGGCGCCACCGCGAGAACATCGTCCGCCTCGCCGCCGGTGAGGAGAGC
CGCATCGGTTCCTCGGGGTC

Downstream 100 bases:

>100_bases
CGCGCCGCTTTCTGTATACGCCGCAATCCGGGGGTGCCCAGTGCGTGTACTAGGCATCGAGAGTTCCTGTGACGAGACCG
CGGCCGCCGTCTACTGTGGT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNECPPGTRPFRVRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLARYLAPLPA
EWAETIQASWPGPMTWVLPASTRAPRWVSGGRDTLAVRVTAHPVAAALCSAFGGALVSTSANPSARRPARSVAEVRRYFG
TRIDALVPGRLGGLERPTPIRDGRSGAYLRR

Sequences:

>Translated_191_residues
MNECPPGTRPFRVRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLARYLAPLPA
EWAETIQASWPGPMTWVLPASTRAPRWVSGGRDTLAVRVTAHPVAAALCSAFGGALVSTSANPSARRPARSVAEVRRYFG
TRIDALVPGRLGGLERPTPIRDGRSGAYLRR
>Mature_191_residues
MNECPPGTRPFRVRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLARYLAPLPA
EWAETIQASWPGPMTWVLPASTRAPRWVSGGRDTLAVRVTAHPVAAALCSAFGGALVSTSANPSARRPARSVAEVRRYFG
TRIDALVPGRLGGLERPTPIRDGRSGAYLRR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=174, Percent_Identity=51.7241379310345, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI87081864, Length=172, Percent_Identity=25.5813953488372, Blast_Score=77, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6321269, Length=160, Percent_Identity=28.75, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_HALHL (A1WZH9)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001003893.1
- ProteinModelPortal:   A1WZH9
- SMR:   A1WZH9
- STRING:   A1WZH9
- GeneID:   4709271
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_2328
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- PhylomeDB:   A1WZH9
- ProtClustDB:   CLSK727694
- BioCyc:   HHAL349124:HHAL_2328-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10
- TIGRFAMs:   TIGR00057

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20522; Mature: 20522

Theoretical pI: Translated: 11.78; Mature: 11.78

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNECPPGTRPFRVRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQG
CCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
LILIAAESRQLARYLAPLPAEWAETIQASWPGPMTWVLPASTRAPRWVSGGRDTLAVRVT
EEEEEECCHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEE
AHPVAAALCSAFGGALVSTSANPSARRPARSVAEVRRYFGTRIDALVPGRLGGLERPTPI
CCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCC
RDGRSGAYLRR
CCCCCCCCCCC
>Mature Secondary Structure
MNECPPGTRPFRVRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQG
CCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
LILIAAESRQLARYLAPLPAEWAETIQASWPGPMTWVLPASTRAPRWVSGGRDTLAVRVT
EEEEEECCHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEE
AHPVAAALCSAFGGALVSTSANPSARRPARSVAEVRRYFGTRIDALVPGRLGGLERPTPI
CCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCC
RDGRSGAYLRR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA