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The map label for this gene is ubiD

Identifier: 121999061

GI number: 121999061

Start: 2505114

End: 2506580

Strand: Reverse

Name: ubiD

Synonym: Hhal_2282

Alternate gene names: 121999061

Gene position: 2506580-2505114 (Counterclockwise)

Preceding gene: 121999062

Following gene: 121999060

Centisome position: 93.58

GC content: 67.42

Gene sequence:

>1467_bases
ATGAAGTACCGCGACCTGCGCGAATTCCTCCACCATCTGGAGGCTCGGGGCGAGCTCAAGCGCATCCGTCACCCGGTGGA
TCCGTATCTGGAGATGACGGAGGTGTGTGACCGCACCCTGCGTGCCGGCGGGCCGGCGCTGCTGTTCGAACATCCGCGTG
GCTACGATACGCCGGTGCTCGGCAACCTCTTCGGTACGCCCCACCGGGTCGCCCTGGGCATGGGGGCCGAGGAGGTTGCG
GCGCTGCGCGAGATCGGCGAACTGCTGGCGTTCCTGCGACAGCCCGAGCCGCCCAAGGGGATGCGCGATGCCTGGAACCA
GCTGCCGGTCTTCCGTCGGGTGCTGGACATGGCGCCGAAGACGGTGCGCAAGGCGCCGTGCCAGGAGCGGGTGATCGAGG
GCGAGGACGTGGATCTGTCCCGCTGGCCAATCCAGACCTGCTGGCCCGGCGACGCCGGTCCGCTGATCACCTGGGCCCTG
GTGATTACCCGGGGCCCGGAAAAGGAACGCCAGAACCTGGGCATCTATCGCCAGCAAGTCATCGGCCGCAACCGGGTCAT
CATGCGCTGGCTGGCCCACCGGGGCGGGGCACTGGATTTCGCCGAGCACCAGCGTCACTACCCTGGTGAGCCCTTCCCCG
TGGCCGTGGCCCTGGGGGCGGATCCGGCGACCATCCTCGGTGCCGTGACCCCGGTGCCCGACGCCATCAGCGAGTATGCG
TTCGCCGGTCTGCTCCGTGGCTCGAAGACGGAGCTGGTGACGTGCAAGGGGTCCTCGCTCCAGGTGCCCGCATCGGCGGA
GGTGGTGCTCGAGGGCCATATCCACCCCGGCGATACCGCCGAGGAGGGGCCTTTCGCCGACCATACCGGTTACTACAACG
AGACCGAGACCTTCCCGGTGTTCACCATTGATCGGATCACGCACCGCGCGGACCCGATCTACCACTCCACCTACACCGGC
CGGCCGCCGGACGAGCCGGCCGTGCTTGGCGAGGCGCTCAACGAGGTCTTCGTGCCGATCCTGCGCAAGCAGTTCCCGGA
GATCGTGGATTTCTATCTGCCACCGGAGGGCTGCTCGTACCGCCTGGCGGTGGTCACCATCCGCAAGCAGTACCCGGGCC
ACGCCAAGCGGGTCATGCTCGGCGTCTGGTCGTTCCTGCGCCAGTTCATGTACACCAAGTTCATCATCGTCACCGACGGC
GACGTGGACGCCCGTGACTGGAAGGCGGTGGTCTGGGCGCTGACCACCCGCAGCGACCCCCGCCGGGATGCCACCTTCAT
CGATCACAGCCCGATCGATTACCTCGATTTCGCTTCCCCCATCTCGGGGCTGGGGTCGAAAATGGGGCTGGACGCCACCA
ATAAGTGGCCCGGGGAGACCGATCGCACTTGGGGGACCCCGGCTACCATGGACGAGGCCACCCGGGCCCGGGTGGACGCC
TACTGGGCCGAACTCGGTCTTGATTGA

Upstream 100 bases:

>100_bases
ATGTCGAGCCGCGCCGCTGGGAACGCCCGTCGGATCACGCCCCGGTGGTGGCCGAGTTCGACCCCGTGGTGCTGGGGGGT
GCCGAGGGCGAGAGGTCGGC

Downstream 100 bases:

>100_bases
TGCGGCGCCGACCGCCCACGAACCAGGCAGAGGCTCATGACCTATACCGTGCGTTTCAGTGACGGCACCGAAATCGGCGT
GGAGTCGGATGAGGCGATCC

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKYRDLREFLHHLEARGELKRIRHPVDPYLEMTEVCDRTLRAGGPALLFEHPRGYDTPVLGNLFGTPHRVALGMGAEEVA
ALREIGELLAFLRQPEPPKGMRDAWNQLPVFRRVLDMAPKTVRKAPCQERVIEGEDVDLSRWPIQTCWPGDAGPLITWAL
VITRGPEKERQNLGIYRQQVIGRNRVIMRWLAHRGGALDFAEHQRHYPGEPFPVAVALGADPATILGAVTPVPDAISEYA
FAGLLRGSKTELVTCKGSSLQVPASAEVVLEGHIHPGDTAEEGPFADHTGYYNETETFPVFTIDRITHRADPIYHSTYTG
RPPDEPAVLGEALNEVFVPILRKQFPEIVDFYLPPEGCSYRLAVVTIRKQYPGHAKRVMLGVWSFLRQFMYTKFIIVTDG
DVDARDWKAVVWALTTRSDPRRDATFIDHSPIDYLDFASPISGLGSKMGLDATNKWPGETDRTWGTPATMDEATRARVDA
YWAELGLD

Sequences:

>Translated_488_residues
MKYRDLREFLHHLEARGELKRIRHPVDPYLEMTEVCDRTLRAGGPALLFEHPRGYDTPVLGNLFGTPHRVALGMGAEEVA
ALREIGELLAFLRQPEPPKGMRDAWNQLPVFRRVLDMAPKTVRKAPCQERVIEGEDVDLSRWPIQTCWPGDAGPLITWAL
VITRGPEKERQNLGIYRQQVIGRNRVIMRWLAHRGGALDFAEHQRHYPGEPFPVAVALGADPATILGAVTPVPDAISEYA
FAGLLRGSKTELVTCKGSSLQVPASAEVVLEGHIHPGDTAEEGPFADHTGYYNETETFPVFTIDRITHRADPIYHSTYTG
RPPDEPAVLGEALNEVFVPILRKQFPEIVDFYLPPEGCSYRLAVVTIRKQYPGHAKRVMLGVWSFLRQFMYTKFIIVTDG
DVDARDWKAVVWALTTRSDPRRDATFIDHSPIDYLDFASPISGLGSKMGLDATNKWPGETDRTWGTPATMDEATRARVDA
YWAELGLD
>Mature_488_residues
MKYRDLREFLHHLEARGELKRIRHPVDPYLEMTEVCDRTLRAGGPALLFEHPRGYDTPVLGNLFGTPHRVALGMGAEEVA
ALREIGELLAFLRQPEPPKGMRDAWNQLPVFRRVLDMAPKTVRKAPCQERVIEGEDVDLSRWPIQTCWPGDAGPLITWAL
VITRGPEKERQNLGIYRQQVIGRNRVIMRWLAHRGGALDFAEHQRHYPGEPFPVAVALGADPATILGAVTPVPDAISEYA
FAGLLRGSKTELVTCKGSSLQVPASAEVVLEGHIHPGDTAEEGPFADHTGYYNETETFPVFTIDRITHRADPIYHSTYTG
RPPDEPAVLGEALNEVFVPILRKQFPEIVDFYLPPEGCSYRLAVVTIRKQYPGHAKRVMLGVWSFLRQFMYTKFIIVTDG
DVDARDWKAVVWALTTRSDPRRDATFIDHSPIDYLDFASPISGLGSKMGLDATNKWPGETDRTWGTPATMDEATRARVDA
YWAELGLD

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=72.2792607802875, Blast_Score=754, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=457, Percent_Identity=24.507658643326, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_HALHL (A1WZD4)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001003848.1
- ProteinModelPortal:   A1WZD4
- SMR:   A1WZD4
- STRING:   A1WZD4
- GeneID:   4709122
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_2282
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   A1WZD4
- BioCyc:   HHAL349124:HHAL_2282-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 54781; Mature: 54781

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRDLREFLHHLEARGELKRIRHPVDPYLEMTEVCDRTLRAGGPALLFEHPRGYDTPVL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
GNLFGTPHRVALGMGAEEVAALREIGELLAFLRQPEPPKGMRDAWNQLPVFRRVLDMAPK
HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHH
TVRKAPCQERVIEGEDVDLSRWPIQTCWPGDAGPLITWALVITRGPEKERQNLGIYRQQV
HHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHEEECCCCHHHHHCCHHHHHH
IGRNRVIMRWLAHRGGALDFAEHQRHYPGEPFPVAVALGADPATILGAVTPVPDAISEYA
HCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHH
FAGLLRGSKTELVTCKGSSLQVPASAEVVLEGHIHPGDTAEEGPFADHTGYYNETETFPV
HHHHHCCCCCEEEEECCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
FTIDRITHRADPIYHSTYTGRPPDEPAVLGEALNEVFVPILRKQFPEIVDFYLPPEGCSY
EEHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIRKQYPGHAKRVMLGVWSFLRQFMYTKFIIVTDGDVDARDWKAVVWALTTRSDP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHEEEEEEEECCCCC
RRDATFIDHSPIDYLDFASPISGLGSKMGLDATNKWPGETDRTWGTPATMDEATRARVDA
CCCCCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
YWAELGLD
HHHHHCCC
>Mature Secondary Structure
MKYRDLREFLHHLEARGELKRIRHPVDPYLEMTEVCDRTLRAGGPALLFEHPRGYDTPVL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
GNLFGTPHRVALGMGAEEVAALREIGELLAFLRQPEPPKGMRDAWNQLPVFRRVLDMAPK
HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHH
TVRKAPCQERVIEGEDVDLSRWPIQTCWPGDAGPLITWALVITRGPEKERQNLGIYRQQV
HHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHEEECCCCHHHHHCCHHHHHH
IGRNRVIMRWLAHRGGALDFAEHQRHYPGEPFPVAVALGADPATILGAVTPVPDAISEYA
HCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHH
FAGLLRGSKTELVTCKGSSLQVPASAEVVLEGHIHPGDTAEEGPFADHTGYYNETETFPV
HHHHHCCCCCEEEEECCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
FTIDRITHRADPIYHSTYTGRPPDEPAVLGEALNEVFVPILRKQFPEIVDFYLPPEGCSY
EEHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIRKQYPGHAKRVMLGVWSFLRQFMYTKFIIVTDGDVDARDWKAVVWALTTRSDP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHEEEEEEEECCCCC
RRDATFIDHSPIDYLDFASPISGLGSKMGLDATNKWPGETDRTWGTPATMDEATRARVDA
CCCCCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
YWAELGLD
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA