| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999031
Identifier: 121999031
GI number: 121999031
Start: 2472416
End: 2473045
Strand: Reverse
Name: 121999031
Synonym: Hhal_2252
Alternate gene names: NA
Gene position: 2473045-2472416 (Counterclockwise)
Preceding gene: 121999032
Following gene: 121999028
Centisome position: 92.33
GC content: 67.62
Gene sequence:
>630_bases ATGGGACGCAGAGGAGCCAACCATCAACGCGATGAGCGCATGCGCTTGAGTCTGATTCGCGAGGCGGCGCGGCTGATGGC CGAGGACGGGGTGCGCGACTACTTCGCCGCCAAGCGGAAGGCCGCGGAGCGCCTCGGTGCCAGCAATACCCGCAACCTCC CCGGCAATCAGGAGATCCACGACGCGCTGCTGGAGTATCGTGCCGTCTTCGGCGGCGAAGAGCATGAGGCGGCGCTGCGC CACCTGCGCCAGCGCGCCCTGGAGGCCATGTCGTTCTTTGCTGATTTTCGCCCGCGGTTGGTGGGGCCGGTGCTCTCCGG CACCGCGGATACTGAATCGCCGGTGCAGTTGCACCTGTTTGCCGATACCCCCGAGACGGTCTTGATGTTCCTTATGGACC GGCGGATCCCCTTCGAGTCCGATGAGCGGCGCTTGCGCTTCGGCCGCGACGGCTGGTCCATCCAGCCCATGTTCCGGTTC CTGGCCGGGGATACCGAGGTGGAACTGACGGTCTTCTCGGAGGCCGGGCTACGGGAGCCGCCGCGCAGCGAGGTGCATGG AGGGGCGATGGAGCGCGCCGGGGTGGCGGAGGTCTCCGCCTTGCTGGAGGAGGCGGTGGGAGAGGAGTAG
Upstream 100 bases:
>100_bases TCCGTGACGACAGCGATCGCCGGCAGCGTGGTGATGAGCACACGGAGCGGGAACTCTTCTAGGCGGGTGCCAACAGACTG CCGGAGCAGGGGGAGGAGCT
Downstream 100 bases:
>100_bases CAACGCCCCGGGGCCGTCGGGTGCTCCCGCCCCGGTGTCTGCGGCGGCGCGGCCCCGGGGAACGGCCCGGAGTGCGCCCT CGGGGCGGGTCTTAACCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MGRRGANHQRDERMRLSLIREAARLMAEDGVRDYFAAKRKAAERLGASNTRNLPGNQEIHDALLEYRAVFGGEEHEAALR HLRQRALEAMSFFADFRPRLVGPVLSGTADTESPVQLHLFADTPETVLMFLMDRRIPFESDERRLRFGRDGWSIQPMFRF LAGDTEVELTVFSEAGLREPPRSEVHGGAMERAGVAEVSALLEEAVGEE
Sequences:
>Translated_209_residues MGRRGANHQRDERMRLSLIREAARLMAEDGVRDYFAAKRKAAERLGASNTRNLPGNQEIHDALLEYRAVFGGEEHEAALR HLRQRALEAMSFFADFRPRLVGPVLSGTADTESPVQLHLFADTPETVLMFLMDRRIPFESDERRLRFGRDGWSIQPMFRF LAGDTEVELTVFSEAGLREPPRSEVHGGAMERAGVAEVSALLEEAVGEE >Mature_208_residues GRRGANHQRDERMRLSLIREAARLMAEDGVRDYFAAKRKAAERLGASNTRNLPGNQEIHDALLEYRAVFGGEEHEAALRH LRQRALEAMSFFADFRPRLVGPVLSGTADTESPVQLHLFADTPETVLMFLMDRRIPFESDERRLRFGRDGWSIQPMFRFL AGDTEVELTVFSEAGLREPPRSEVHGGAMERAGVAEVSALLEEAVGEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23565; Mature: 23434
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRRGANHQRDERMRLSLIREAARLMAEDGVRDYFAAKRKAAERLGASNTRNLPGNQEIH CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH DALLEYRAVFGGEEHEAALRHLRQRALEAMSFFADFRPRLVGPVLSGTADTESPVQLHLF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE ADTPETVLMFLMDRRIPFESDERRLRFGRDGWSIQPMFRFLAGDTEVELTVFSEAGLREP CCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCC PRSEVHGGAMERAGVAEVSALLEEAVGEE CHHHHCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GRRGANHQRDERMRLSLIREAARLMAEDGVRDYFAAKRKAAERLGASNTRNLPGNQEIH CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH DALLEYRAVFGGEEHEAALRHLRQRALEAMSFFADFRPRLVGPVLSGTADTESPVQLHLF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE ADTPETVLMFLMDRRIPFESDERRLRFGRDGWSIQPMFRFLAGDTEVELTVFSEAGLREP CCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCC PRSEVHGGAMERAGVAEVSALLEEAVGEE CHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA