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The map label for this gene is cheD

Identifier: 121998940

GI number: 121998940

Start: 2373592

End: 2374242

Strand: Reverse

Name: cheD

Synonym: Hhal_2161

Alternate gene names: 121998940

Gene position: 2374242-2373592 (Counterclockwise)

Preceding gene: 121998941

Following gene: 121998939

Centisome position: 88.64

GC content: 65.59

Gene sequence:

>651_bases
ATGCAGCTGGGGGCGTTTCGCAACCGCGGCGTTACCGTGCCCGACTGTCTGCCGGGGTTCGGGCACATCAACCGCTACTG
GGATCCGGAGCATCAGGTCTTCGCGGCCAAGATCCTGCCCGGAGAGTTCTATGTCACCCGCGGCAATGAGATGATCGTCA
CCACGCTCGGCTCCTGTGTCTCGGCCTGCGTTCGGGATCGGCGCCTGGGGGTCGGGGGCATGAACCACTTCATGCTGCCT
GTCCGCGGAGGCGATCCGAACCACTGGGAGGGCGATCCACTGAGTACCGCGACCCGGTACGGCAATCACGCCATGGAGCA
GCTGATCAACCGCGTCCTCGCCCTGGGCGGTCAGCGCCAGGAGCTGGAGGTCAAGCTCTTCGGCGGTGGGCGGGTGCTGG
CCGGGGTCACCGATGTGGGGAAACGGAACATCGAGTTTGCCGAAAGCTATGTGCGGACGGAGGGTCTGCGGCTGATCGGT
CGAGATCTGGGTGGCCAGTATCCCCGGAAGGTGCAGTACTTCCCCGAGAGCGGACGGGCGCGGTCGAAGAAGCTCCTGCG
CACGCGCAACGACACCGTCGTGCGCCGCGAGGAGCACTACCTCCACGAGATCGACGAGCAGCCGGTCTCCGGCGACGTCG
ACCTGTTTTGA

Upstream 100 bases:

>100_bases
AGGCGTGGCTCTACATCGGCCACTCGGAGACCCTCTGGCGGGTCAGTGAGCGGTTTGAATCCCACGGCCGCACCATCTAC
CGCAAGGTCGGATGAGTACC

Downstream 100 bases:

>100_bases
GGACGCAGCGCGGTATGATCCGGGTCCTGATTGTCGACGACTCCGCGCTGATCCGGCGGCTGCTGGCCGAGCTGTTCGCA
GCGGAAGAGGGCATCGAGGT

Product: chemoreceptor glutamine deamidase CheD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MQLGAFRNRGVTVPDCLPGFGHINRYWDPEHQVFAAKILPGEFYVTRGNEMIVTTLGSCVSACVRDRRLGVGGMNHFMLP
VRGGDPNHWEGDPLSTATRYGNHAMEQLINRVLALGGQRQELEVKLFGGGRVLAGVTDVGKRNIEFAESYVRTEGLRLIG
RDLGGQYPRKVQYFPESGRARSKKLLRTRNDTVVRREEHYLHEIDEQPVSGDVDLF

Sequences:

>Translated_216_residues
MQLGAFRNRGVTVPDCLPGFGHINRYWDPEHQVFAAKILPGEFYVTRGNEMIVTTLGSCVSACVRDRRLGVGGMNHFMLP
VRGGDPNHWEGDPLSTATRYGNHAMEQLINRVLALGGQRQELEVKLFGGGRVLAGVTDVGKRNIEFAESYVRTEGLRLIG
RDLGGQYPRKVQYFPESGRARSKKLLRTRNDTVVRREEHYLHEIDEQPVSGDVDLF
>Mature_216_residues
MQLGAFRNRGVTVPDCLPGFGHINRYWDPEHQVFAAKILPGEFYVTRGNEMIVTTLGSCVSACVRDRRLGVGGMNHFMLP
VRGGDPNHWEGDPLSTATRYGNHAMEQLINRVLALGGQRQELEVKLFGGGRVLAGVTDVGKRNIEFAESYVRTEGLRLIG
RDLGGQYPRKVQYFPESGRARSKKLLRTRNDTVVRREEHYLHEIDEQPVSGDVDLF

Specific function: Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis

COG id: COG1871

COG function: function code NT; Chemotaxis protein; stimulates methylation of MCP proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CheD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CHED_HALHL (A1WZ13)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001003727.1
- ProteinModelPortal:   A1WZ13
- SMR:   A1WZ13
- STRING:   A1WZ13
- GeneID:   4709716
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_2161
- eggNOG:   COG1871
- HOGENOM:   HBG531149
- OMA:   PRKVYFF
- ProtClustDB:   PRK13487
- BioCyc:   HHAL349124:HHAL_2161-MONOMER
- GO:   GO:0006935
- HAMAP:   MF_01440
- InterPro:   IPR005659

Pfam domain/function: PF03975 CheD

EC number: =3.5.1.44

Molecular weight: Translated: 24280; Mature: 24280

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLGAFRNRGVTVPDCLPGFGHINRYWDPEHQVFAAKILPGEFYVTRGNEMIVTTLGSCV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEHHHHHHH
SACVRDRRLGVGGMNHFMLPVRGGDPNHWEGDPLSTATRYGNHAMEQLINRVLALGGQRQ
HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCC
ELEVKLFGGGRVLAGVTDVGKRNIEFAESYVRTEGLRLIGRDLGGQYPRKVQYFPESGRA
EEEEEEECCCEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH
RSKKLLRTRNDTVVRREEHYLHEIDEQPVSGDVDLF
HHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQLGAFRNRGVTVPDCLPGFGHINRYWDPEHQVFAAKILPGEFYVTRGNEMIVTTLGSCV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEHHHHHHH
SACVRDRRLGVGGMNHFMLPVRGGDPNHWEGDPLSTATRYGNHAMEQLINRVLALGGQRQ
HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCC
ELEVKLFGGGRVLAGVTDVGKRNIEFAESYVRTEGLRLIGRDLGGQYPRKVQYFPESGRA
EEEEEEECCCEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH
RSKKLLRTRNDTVVRREEHYLHEIDEQPVSGDVDLF
HHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA