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The map label for this gene is rdgC

Identifier: 121998848

GI number: 121998848

Start: 2274632

End: 2275540

Strand: Reverse

Name: rdgC

Synonym: Hhal_2069

Alternate gene names: 121998848

Gene position: 2275540-2274632 (Counterclockwise)

Preceding gene: 121998849

Following gene: 121998846

Centisome position: 84.96

GC content: 70.63

Gene sequence:

>909_bases
ATGTGGTTTCGTAATCTCATCCCCTACCGCCTCCGCGACCAGGTCGCCTACGACCCGGAGACTGCGGATCAGCGTCTGGC
CGCGCTGGCCTTCACCCCCTGCGGGGCGCTGGAGCCGAGTCGCAGCGGCTTCGTGCCGCCGCTCGGTCCGGGGGCGCCGC
TGGTGCACGCCGCCGCCGGTAGCCTGCTGTTCTGCCTGCAGGAGGAGACCAAGCTGCTCCCCGCCGCGGTGATCCGCGAG
GCGATGGACGAGCGGATCGGTGCGGTGGAGGCCGCCGAGCACCGCAAGGTGCGCAAGCGCGAGCGGGATCGCATCCGCGA
CGAGGTGGTCACCGACCTCATGCCGCGGGCGTTCAGCCGCCACAAGCGCACCTGGGGCTACCTGGATACCGAGGCCGGCT
ACCTGGTGGTGGATGCCGGCTCCGAGAAGCAGGCCGAGCACTTCGTCGAGCAGCTCCGCGAGGCGTGGGGGGATCTCACC
CTGAGCCCGCCGGAGACGGAGATGGGGCCGGGCACCATCATGACCCGCTGGCTGGCGCAGCAGCAGCTCCCCGGCGACCT
TGAGCTGGGCGAGGAGGCCGTGCTCGAGGACCCCAACGCCGAGGGCTGCGAGGTCCGCGTCAAGCGCCAGGACCTGACCT
CGGAGGAGATGCGCGCCCACATCGACGCCGGCAAGCGGGTGCGCCGGCTGGCGGTGACCTACAGCGAGCGTCTCAGCGCG
GTGATCGACACCGATCTGAGCCTGCGTCGGCTGAAGTTCCACGACGTCATCCGCGAGCAGGCCGGCGATCGCGACCCGGA
GAGCCAGGCCGAACAGCTCGATGCCGACTTCTCGCTCATGACCCTCGAGCTGCGCACGCTGATCCCGCGCCTGATGGAGT
GGTTCGGCGGGGAGAAGGCCCCCTCCTGA

Upstream 100 bases:

>100_bases
CCGAGCCCCGGCCGGAAGATGGGCCATATCACCGTCCTCGGCGAGGACCGGCAGGAGGCCGCCGAGCGCGCCCTGAACCT
GCGCAACCGACTGGCACCCC

Downstream 100 bases:

>100_bases
CGGCCGCCCAGGCCGGGTCGGGTTCGTCCTACGGGGGGCAGCGGCGGGTCTGCCAAGGGCCTCGCTCGCCAGGGATGGCG
AGCGTGGAGCCTCTAGGGAT

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGPGAPLVHAAAGSLLFCLQEETKLLPAAVIRE
AMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFSRHKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLT
LSPPETEMGPGTIMTRWLAQQQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLSA
VIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGEKAPS

Sequences:

>Translated_302_residues
MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGPGAPLVHAAAGSLLFCLQEETKLLPAAVIRE
AMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFSRHKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLT
LSPPETEMGPGTIMTRWLAQQQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLSA
VIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGEKAPS
>Mature_302_residues
MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGPGAPLVHAAAGSLLFCLQEETKLLPAAVIRE
AMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFSRHKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLT
LSPPETEMGPGTIMTRWLAQQQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLSA
VIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGEKAPS

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=299, Percent_Identity=41.1371237458194, Blast_Score=238, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_HALHL (A1WYS1)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001003635.1
- ProteinModelPortal:   A1WYS1
- SMR:   A1WYS1
- STRING:   A1WYS1
- GeneID:   4710105
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_2069
- eggNOG:   COG2974
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- PhylomeDB:   A1WYS1
- ProtClustDB:   PRK00321
- BioCyc:   HHAL349124:HHAL_2069-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34100; Mature: 34100

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGPGAPLVHAAAG
CCCHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
SLLFCLQEETKLLPAAVIREAMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFSR
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLTLSPPETEMGPGTIMTRWLAQ
HCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
QQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLSA
HCCCCCCCCCCHHHCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGEKA
HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
PS
CC
>Mature Secondary Structure
MWFRNLIPYRLRDQVAYDPETADQRLAALAFTPCGALEPSRSGFVPPLGPGAPLVHAAAG
CCCHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
SLLFCLQEETKLLPAAVIREAMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFSR
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HKRTWGYLDTEAGYLVVDAGSEKQAEHFVEQLREAWGDLTLSPPETEMGPGTIMTRWLAQ
HCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
QQLPGDLELGEEAVLEDPNAEGCEVRVKRQDLTSEEMRAHIDAGKRVRRLAVTYSERLSA
HCCCCCCCCCCHHHCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDTDLSLRRLKFHDVIREQAGDRDPESQAEQLDADFSLMTLELRTLIPRLMEWFGGEKA
HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
PS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA