| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998783
Identifier: 121998783
GI number: 121998783
Start: 2208630
End: 2208971
Strand: Reverse
Name: 121998783
Synonym: Hhal_2004
Alternate gene names: NA
Gene position: 2208971-2208630 (Counterclockwise)
Preceding gene: 121998784
Following gene: 121998782
Centisome position: 82.47
GC content: 68.13
Gene sequence:
>342_bases ATGGCTCGCGCCCTTACGGCAGAGCGACTCGAGTGCGAGAACGCCACGTTCCACGGGACCGGTGGGGTCAGTGCCTGCAA TCGGGATCACGGTTTCCGGCCGGCCTTCCTCGATACGGAGACGGGGACGATCTACCTCTCCTGCAACCGGAGCGGGCAGC CGGCCCCCTTCCATCGCCTCGACGGTCTGCCCGAAGAGCTGATCAGCGAGCGCGATGACCGCGGCCGGGTGATCGCGGTG AGGCAGCGCGTGGTCTCGGGGTTCGAGCGCGATGGCTGCTTCTACACCCGTGAGCAGGCCGCCTGCTTCGTGGTCCCGCC CACTCCGCGACAAGGCTCCTGA
Upstream 100 bases:
>100_bases ACCAGAATCAGTAGCAGCGCAGGAGCGTTGCCCGGCTCAGGGGGCCAGCGGAGCGGCCGATCACCCTTGAAGCGGTATCG ACGTTCGGAGGTGGTGAGCG
Downstream 100 bases:
>100_bases CTCGTGGCGCAGTTGCAAGTCACGCTGGAGGTGGCGGCCGGCGACCTCGACGCCGTGGATGGCGCACTGGAGTTGGCCGG GGCGCTGTCCCAGACCTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 113; Mature: 112
Protein sequence:
>113_residues MARALTAERLECENATFHGTGGVSACNRDHGFRPAFLDTETGTIYLSCNRSGQPAPFHRLDGLPEELISERDDRGRVIAV RQRVVSGFERDGCFYTREQAACFVVPPTPRQGS
Sequences:
>Translated_113_residues MARALTAERLECENATFHGTGGVSACNRDHGFRPAFLDTETGTIYLSCNRSGQPAPFHRLDGLPEELISERDDRGRVIAV RQRVVSGFERDGCFYTREQAACFVVPPTPRQGS >Mature_112_residues ARALTAERLECENATFHGTGGVSACNRDHGFRPAFLDTETGTIYLSCNRSGQPAPFHRLDGLPEELISERDDRGRVIAVR QRVVSGFERDGCFYTREQAACFVVPPTPRQGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12502; Mature: 12371
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARALTAERLECENATFHGTGGVSACNRDHGFRPAFLDTETGTIYLSCNRSGQPAPFHRL CCCCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCHHH DGLPEELISERDDRGRVIAVRQRVVSGFERDGCFYTREQAACFVVPPTPRQGS CCCCHHHHCCCCCCCCEEEEHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCC >Mature Secondary Structure ARALTAERLECENATFHGTGGVSACNRDHGFRPAFLDTETGTIYLSCNRSGQPAPFHRL CCCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCHHH DGLPEELISERDDRGRVIAVRQRVVSGFERDGCFYTREQAACFVVPPTPRQGS CCCCHHHHCCCCCCCCEEEEHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA