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The map label for this gene is ytfM [H]

Identifier: 121998748

GI number: 121998748

Start: 2169472

End: 2171193

Strand: Reverse

Name: ytfM [H]

Synonym: Hhal_1969

Alternate gene names: 121998748

Gene position: 2171193-2169472 (Counterclockwise)

Preceding gene: 121998750

Following gene: 121998747

Centisome position: 81.06

GC content: 68.35

Gene sequence:

>1722_bases
ATGCGTCTGGCTGCGCTGGTCCTGCTGATCCTCCTGGCCCTGCTTGGCCGTCCGGCCTACGCCGGGGTGGAGGTGGTCAT
CGAGGGGGTTAGCGGCGAGCTCGCCGATCAGGTGCGCGGCCACGTGGGGGAGCCGGCGTCTGCCGATCCCGCCGCGATCA
CCGCGTTCCGTCGCCGCGCGGTGGAGCGGGCCGAACGCGGTTTGCAGGCCGTGGGCCACTACGATGCACAGATCGAGGTG
CGTCGGGAGCGTCTCGACGAACAGGTGCGATTGACCATCGTCGTCGACCCTGGCGAACCGGTGCGTCTGAGCCGGATCCA
TGTGCTGATCACCGGACCGGGAGGGACCGATCCGGCCTTCGCTGGCATCGAGCAGCGCTTGGGGATCGGTGAGGGTGATG
TTCTCCACCACGGTCGCTACGAGGCGGCGCGTCGGGCTATCCAGAACCTGGCGCTGGACCAGGGGTACTTCGATGGTCGC
TACGTCACCCGGCGCGTGGAGGTCGACCCGGAGGCCCGCGAGGCCGAGGTGATCCTGCACTACCACACCGGTGTGCGCTA
CCGCTTCGGCGCGGTACGGTTCTCGGAATCGCCGCTGGCCGAGGCGTTCCTGCAGCGGCTGGTTCCCTTCGAACGCGACG
AGCCGTATACCGCCGAACAGGTGGCGGCCTTCAACCGCGCGTTGCTCGACAGTGGCTACTTTTCCGATGTGCGGGTGCGT
CCGCGGCGGGATCGCACCGAGGATGATCAGGTGCCGGTGGACGTGGACCTCTCCGCGCGGGCCCGGCACGAGATCACCAC
TGGCGTCGGCTTCACCACCGACCTCGGCGCCCGCGTGCGCCTGGGCTGGCGTCGGCCGTGGGTGAACCAGTGGGGGCACT
CGCTGGCGGTGGAGAGCGAGATCGCCGAGCGCCGGCAGAACCTCATCAGCACCTATACGGTGCCGCTGCGCGATCCCCTG
CGCACCCAGCTGGAGTACCAGCTCGGTATCCAGGCGCAGGACGTGGCCGATATCGACACCGAACAGGTCACCGCATCGGT
TCAGCACCGGCATCGCCTCGAGAGCGGTTGGCAGCAGGTCCTGTCCCTGCGCGCCTACCGCGAGCGTTACCGCATCGACG
ACGATCAGCGCACCACCCAGCTCTACATCCCCGGGGTTAGCTGGAGCCGGGTGCGCAGCCGCGGTGGGCTCGATCCGCGC
TGGGGCGACCGGCAAATGCTGAGCCTGGAGGTGGCCGACCCGGATCTGGCTTCGGACATCGAGCTGCGCCGCGTGCGCAC
CGCCACCCGCTGGGTGCGCACGCTGGGGGAGCGCCACCGGTTCCTTATCCGTGGCGAGGTCGGTGCGCTGGCCACGGACT
CGTTCGTCGATGTGCCGCCTTCGCTGCGCTTCTACGCCGGTGGCGATCAGAGTGTACGCGGCTATAAGTACCAGACTCTG
GGGCCCGAGGAAGATGGGACCACCATCGGTGGCCGTTATCTGGCGGTGGGCAGTGCCGAATACGGTTATCAGCTCACCCC
CAACTGGCGCCCGGCGATCTTCGTGGACAGCGGTAATGCCTACGCCGACTGGGATGACTTGAGTGCTGAGGCGAAGACGG
GTGCTGGCTTCGGCATCCGCTGGTCGTCCCCGGTGGGGCCGGTCCGCCTCGACCTCGCCTCCACGGTGGGGGAAGCGGAC
GACTCCTGGCGTCTCCACTTCTCGATGGGGTCGGATCTGTGA

Upstream 100 bases:

>100_bases
CATGGACCTCGTGATCCCCTCTGCTGATCGACCAGGGCACCCCGACGGTGCCGCGGCCCCCGAGTATACAAGTCTGCGCC
GGCGCTTGGTGAGGACCCGG

Downstream 100 bases:

>100_bases
TCTCGCTGCGTCGTCTGTTCAAGCTCTCCGCCACCACCGTCCTGGCCGCCCTCGGGCTGCTGGTGCTGGCGATCCTGTGG
CTGCTGATGACCACCGCCGG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 573

Protein sequence:

>573_residues
MRLAALVLLILLALLGRPAYAGVEVVIEGVSGELADQVRGHVGEPASADPAAITAFRRRAVERAERGLQAVGHYDAQIEV
RRERLDEQVRLTIVVDPGEPVRLSRIHVLITGPGGTDPAFAGIEQRLGIGEGDVLHHGRYEAARRAIQNLALDQGYFDGR
YVTRRVEVDPEAREAEVILHYHTGVRYRFGAVRFSESPLAEAFLQRLVPFERDEPYTAEQVAAFNRALLDSGYFSDVRVR
PRRDRTEDDQVPVDVDLSARARHEITTGVGFTTDLGARVRLGWRRPWVNQWGHSLAVESEIAERRQNLISTYTVPLRDPL
RTQLEYQLGIQAQDVADIDTEQVTASVQHRHRLESGWQQVLSLRAYRERYRIDDDQRTTQLYIPGVSWSRVRSRGGLDPR
WGDRQMLSLEVADPDLASDIELRRVRTATRWVRTLGERHRFLIRGEVGALATDSFVDVPPSLRFYAGGDQSVRGYKYQTL
GPEEDGTTIGGRYLAVGSAEYGYQLTPNWRPAIFVDSGNAYADWDDLSAEAKTGAGFGIRWSSPVGPVRLDLASTVGEAD
DSWRLHFSMGSDL

Sequences:

>Translated_573_residues
MRLAALVLLILLALLGRPAYAGVEVVIEGVSGELADQVRGHVGEPASADPAAITAFRRRAVERAERGLQAVGHYDAQIEV
RRERLDEQVRLTIVVDPGEPVRLSRIHVLITGPGGTDPAFAGIEQRLGIGEGDVLHHGRYEAARRAIQNLALDQGYFDGR
YVTRRVEVDPEAREAEVILHYHTGVRYRFGAVRFSESPLAEAFLQRLVPFERDEPYTAEQVAAFNRALLDSGYFSDVRVR
PRRDRTEDDQVPVDVDLSARARHEITTGVGFTTDLGARVRLGWRRPWVNQWGHSLAVESEIAERRQNLISTYTVPLRDPL
RTQLEYQLGIQAQDVADIDTEQVTASVQHRHRLESGWQQVLSLRAYRERYRIDDDQRTTQLYIPGVSWSRVRSRGGLDPR
WGDRQMLSLEVADPDLASDIELRRVRTATRWVRTLGERHRFLIRGEVGALATDSFVDVPPSLRFYAGGDQSVRGYKYQTL
GPEEDGTTIGGRYLAVGSAEYGYQLTPNWRPAIFVDSGNAYADWDDLSAEAKTGAGFGIRWSSPVGPVRLDLASTVGEAD
DSWRLHFSMGSDL
>Mature_573_residues
MRLAALVLLILLALLGRPAYAGVEVVIEGVSGELADQVRGHVGEPASADPAAITAFRRRAVERAERGLQAVGHYDAQIEV
RRERLDEQVRLTIVVDPGEPVRLSRIHVLITGPGGTDPAFAGIEQRLGIGEGDVLHHGRYEAARRAIQNLALDQGYFDGR
YVTRRVEVDPEAREAEVILHYHTGVRYRFGAVRFSESPLAEAFLQRLVPFERDEPYTAEQVAAFNRALLDSGYFSDVRVR
PRRDRTEDDQVPVDVDLSARARHEITTGVGFTTDLGARVRLGWRRPWVNQWGHSLAVESEIAERRQNLISTYTVPLRDPL
RTQLEYQLGIQAQDVADIDTEQVTASVQHRHRLESGWQQVLSLRAYRERYRIDDDQRTTQLYIPGVSWSRVRSRGGLDPR
WGDRQMLSLEVADPDLASDIELRRVRTATRWVRTLGERHRFLIRGEVGALATDSFVDVPPSLRFYAGGDQSVRGYKYQTL
GPEEDGTTIGGRYLAVGSAEYGYQLTPNWRPAIFVDSGNAYADWDDLSAEAKTGAGFGIRWSSPVGPVRLDLASTVGEAD
DSWRLHFSMGSDL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=571, Percent_Identity=36.6024518388792, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64245; Mature: 64245

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAALVLLILLALLGRPAYAGVEVVIEGVSGELADQVRGHVGEPASADPAAITAFRRRA
CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
VERAERGLQAVGHYDAQIEVRRERLDEQVRLTIVVDPGEPVRLSRIHVLITGPGGTDPAF
HHHHHHHHHHHCCCCCEEEEHHHCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHH
AGIEQRLGIGEGDVLHHGRYEAARRAIQNLALDQGYFDGRYVTRRVEVDPEAREAEVILH
HHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEE
YHTGVRYRFGAVRFSESPLAEAFLQRLVPFERDEPYTAEQVAAFNRALLDSGYFSDVRVR
EECCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEC
PRRDRTEDDQVPVDVDLSARARHEITTGVGFTTDLGARVRLGWRRPWVNQWGHSLAVESE
CCCCCCCCCCCCEEECCCCCCCHHHHCCCCCEECCCCEEEECCCCCCHHHCCCCEEHHHH
IAERRQNLISTYTVPLRDPLRTQLEYQLGIQAQDVADIDTEQVTASVQHRHRLESGWQQV
HHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSLRAYRERYRIDDDQRTTQLYIPGVSWSRVRSRGGLDPRWGDRQMLSLEVADPDLASDI
HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCH
ELRRVRTATRWVRTLGERHRFLIRGEVGALATDSFVDVPPSLRFYAGGDQSVRGYKYQTL
HHHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCEEEECCCCCCCCEEEEEC
GPEEDGTTIGGRYLAVGSAEYGYQLTPNWRPAIFVDSGNAYADWDDLSAEAKTGAGFGIR
CCCCCCCEECCEEEEEECCCCCEEECCCCCCEEEEECCCCEECHHHCCCCCCCCCCCCEE
WSSPVGPVRLDLASTVGEADDSWRLHFSMGSDL
ECCCCCCEEEEHHHHCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MRLAALVLLILLALLGRPAYAGVEVVIEGVSGELADQVRGHVGEPASADPAAITAFRRRA
CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
VERAERGLQAVGHYDAQIEVRRERLDEQVRLTIVVDPGEPVRLSRIHVLITGPGGTDPAF
HHHHHHHHHHHCCCCCEEEEHHHCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHH
AGIEQRLGIGEGDVLHHGRYEAARRAIQNLALDQGYFDGRYVTRRVEVDPEAREAEVILH
HHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEE
YHTGVRYRFGAVRFSESPLAEAFLQRLVPFERDEPYTAEQVAAFNRALLDSGYFSDVRVR
EECCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEC
PRRDRTEDDQVPVDVDLSARARHEITTGVGFTTDLGARVRLGWRRPWVNQWGHSLAVESE
CCCCCCCCCCCCEEECCCCCCCHHHHCCCCCEECCCCEEEECCCCCCHHHCCCCEEHHHH
IAERRQNLISTYTVPLRDPLRTQLEYQLGIQAQDVADIDTEQVTASVQHRHRLESGWQQV
HHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSLRAYRERYRIDDDQRTTQLYIPGVSWSRVRSRGGLDPRWGDRQMLSLEVADPDLASDI
HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCH
ELRRVRTATRWVRTLGERHRFLIRGEVGALATDSFVDVPPSLRFYAGGDQSVRGYKYQTL
HHHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCEEEECCCCCCCCEEEEEC
GPEEDGTTIGGRYLAVGSAEYGYQLTPNWRPAIFVDSGNAYADWDDLSAEAKTGAGFGIR
CCCCCCCEECCEEEEEECCCCCEEECCCCCCEEEEECCCCEECHHHCCCCCCCCCCCCEE
WSSPVGPVRLDLASTVGEADDSWRLHFSMGSDL
ECCCCCCEEEEHHHHCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]