| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998728
Identifier: 121998728
GI number: 121998728
Start: 2146956
End: 2147531
Strand: Reverse
Name: 121998728
Synonym: Hhal_1949
Alternate gene names: NA
Gene position: 2147531-2146956 (Counterclockwise)
Preceding gene: 121998729
Following gene: 121998726
Centisome position: 80.18
GC content: 69.97
Gene sequence:
>576_bases ATGCGTACCAAGACCCACTGGTTCCGGCCCCGCGAGGAGCAGCAGCCGGAAGAGGTCGGCGCCGCGGCGTCGATCCGTGC CTGGCGCATCGCGACTTCCGCGGTGCGAACGCTGTCGGAAGACGGACCGATCACCGACCGCACCGGCGGACACCTGGCGC TGGTGGAGGAGCTGCTGCTCTTCGCCGTGCAGTACACCGACCGCCTCGCCTGGCTGCGGGGTCTGGAGGATGAATCGCGC CGCCGGCTGGTCGAGGCCATGGTCAAGCGCCTGGCCGATGGCATCCGCGACAACAGCGGCGCGCCGGACGCCGGCCAGGC GTTCCTGGCCCGTGCCGGAGAGCGTCTCAACGAGTACGCGCGCATCGATTACGCCGGCGAGGATCCGGGGTTCCCGGCCT ACAATCTGCTTGGCCAGCGTGGCTGTGACGCCAGTGACCGGCCGCGGGATCTGTGGTTGCACGGTCGTCTGACCGAGGTG GAGGGGCCGGAGATGATTGCGGATCTTCGGCCGGTGATCGGCGGTTTGCTGGGCAACCTGGGGGTCGGTGCCGGCGAGCA CCTGGTCCGGGGGTGA
Upstream 100 bases:
>100_bases TGGGCCCTGAGGCCGGGCGCCGGCTCCAGGCCCGCGGTCTGGGCAGCGGCCGTTGCTGGGGCTGCGGACTATTCCTTCCC CACAAGGCGGTGACCTGATC
Downstream 100 bases:
>100_bases TCGCACGGCGTGTGCGCGGGTCCGGGGCCACGCCCCGGGGACTTGGAAGTGCCGCGGCCGCGGCCCGGGAGGTCCGGACT GCGGCCGCCGGCAGCCACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MRTKTHWFRPREEQQPEEVGAAASIRAWRIATSAVRTLSEDGPITDRTGGHLALVEELLLFAVQYTDRLAWLRGLEDESR RRLVEAMVKRLADGIRDNSGAPDAGQAFLARAGERLNEYARIDYAGEDPGFPAYNLLGQRGCDASDRPRDLWLHGRLTEV EGPEMIADLRPVIGGLLGNLGVGAGEHLVRG
Sequences:
>Translated_191_residues MRTKTHWFRPREEQQPEEVGAAASIRAWRIATSAVRTLSEDGPITDRTGGHLALVEELLLFAVQYTDRLAWLRGLEDESR RRLVEAMVKRLADGIRDNSGAPDAGQAFLARAGERLNEYARIDYAGEDPGFPAYNLLGQRGCDASDRPRDLWLHGRLTEV EGPEMIADLRPVIGGLLGNLGVGAGEHLVRG >Mature_191_residues MRTKTHWFRPREEQQPEEVGAAASIRAWRIATSAVRTLSEDGPITDRTGGHLALVEELLLFAVQYTDRLAWLRGLEDESR RRLVEAMVKRLADGIRDNSGAPDAGQAFLARAGERLNEYARIDYAGEDPGFPAYNLLGQRGCDASDRPRDLWLHGRLTEV EGPEMIADLRPVIGGLLGNLGVGAGEHLVRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21097; Mature: 21097
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTKTHWFRPREEQQPEEVGAAASIRAWRIATSAVRTLSEDGPITDRTGGHLALVEELLL CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH FAVQYTDRLAWLRGLEDESRRRLVEAMVKRLADGIRDNSGAPDAGQAFLARAGERLNEYA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH RIDYAGEDPGFPAYNLLGQRGCDASDRPRDLWLHGRLTEVEGPEMIADLRPVIGGLLGNL HCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHC GVGAGEHLVRG CCCCCHHHHCC >Mature Secondary Structure MRTKTHWFRPREEQQPEEVGAAASIRAWRIATSAVRTLSEDGPITDRTGGHLALVEELLL CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH FAVQYTDRLAWLRGLEDESRRRLVEAMVKRLADGIRDNSGAPDAGQAFLARAGERLNEYA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH RIDYAGEDPGFPAYNLLGQRGCDASDRPRDLWLHGRLTEVEGPEMIADLRPVIGGLLGNL HCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHC GVGAGEHLVRG CCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA