| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998709
Identifier: 121998709
GI number: 121998709
Start: 2127375
End: 2128070
Strand: Reverse
Name: 121998709
Synonym: Hhal_1930
Alternate gene names: NA
Gene position: 2128070-2127375 (Counterclockwise)
Preceding gene: 121998713
Following gene: 121998705
Centisome position: 79.45
GC content: 73.56
Gene sequence:
>696_bases ATGTACGGGTGGCTGGAAGCGGCGGCTCCGATCAGTGGGTTCGGCTGGGCGGGGCTCGCCCTGGGGGCACTGCTGCTGGC CCTCGCCCTCGGGCTGACCGTTGCCGGCGGGGCGGCGCTGCTGCGCGGTCGTCTGCTCCGTGGTGCCTCGGGGCTGGCCG GTGGGCTGATCCTGCTCGGCGGGTTGGGGACCGCCGGCGCCCTGGCACTGGGTGTGCTGGCCTACGAGCGGCTGGAGCAG GAGCGTCCGGCGCTCGCCCTCCACTTCCAGCAGGTGGATGAGCAGCGCTACGTCGCCCGGTTGGCCTATCCCGACGGGGG GACGGTCGCTCTGCCCCTGGCCGGGGATCAATGGCAGGTGGATGCCCGGGTTCTGCGTTGGAGCGGGTTCGCGGCCCTGC TGGGGCTGGAGACCCGCTATCGGCTGGAGCGGATCAGCGGTCGTTACGCCGATCTGGAGGCGGAGCGCGCGGCCCCGCGC ACGGTGCACGCCCTGGCGTCTCCCCAACGGGGTATCGATCCGTGGCTGCTGGGGCAGCGCCACGGCGATCGCCTGCCGTG GGTGGATGCGGCCTACGGCAGTGCCGCCTATCTGCCCATGGCCGACGGCGCCGAGTACCGGGTGGCGGTGACCCGCAGTG GTCTCGTTGCCCGACCGGCCAACGCCGAGGCCGAGGAGGCGGTCCGCCGCTGGTAG
Upstream 100 bases:
>100_bases CGCGACGGCCCCGGCCGAGCGCTCCGGACACCATATACGCAATCACTCAGCGTATCATCCCGCATAGGTTACAGCGTCGC GGGTTCGCGGGGGAGACCGC
Downstream 100 bases:
>100_bases GCCTCAGTCCCGGGCCCAGCCGGCGCGGCCAACCCGCTGGCCGCGGCGGTCGAAGAGGAGGACCTCCACCTCGCTGCACG CCGGGTCGATCAGGTTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLGGLGTAGALALGVLAYERLEQ ERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQVDARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPR TVHALASPQRGIDPWLLGQRHGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW
Sequences:
>Translated_231_residues MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLGGLGTAGALALGVLAYERLEQ ERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQVDARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPR TVHALASPQRGIDPWLLGQRHGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW >Mature_231_residues MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLGGLGTAGALALGVLAYERLEQ ERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQVDARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPR TVHALASPQRGIDPWLLGQRHGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24532; Mature: 24532
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE GLGTAGALALGVLAYERLEQERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQV CCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHEEEEECCCCCEEEEEECCCCEEH DARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPRTVHALASPQRGIDPWLLGQR HHEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHCCCCCCCCHHCCCCC HGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW CCCCCCEEECCCCCEEEEECCCCCCEEEEEECCCCEECCCCCCHHHHHHCC >Mature Secondary Structure MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE GLGTAGALALGVLAYERLEQERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQV CCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHEEEEECCCCCEEEEEECCCCEEH DARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPRTVHALASPQRGIDPWLLGQR HHEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHCCCCCCCCHHCCCCC HGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW CCCCCCEEECCCCCEEEEECCCCCCEEEEEECCCCEECCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA