Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998709

Identifier: 121998709

GI number: 121998709

Start: 2127375

End: 2128070

Strand: Reverse

Name: 121998709

Synonym: Hhal_1930

Alternate gene names: NA

Gene position: 2128070-2127375 (Counterclockwise)

Preceding gene: 121998713

Following gene: 121998705

Centisome position: 79.45

GC content: 73.56

Gene sequence:

>696_bases
ATGTACGGGTGGCTGGAAGCGGCGGCTCCGATCAGTGGGTTCGGCTGGGCGGGGCTCGCCCTGGGGGCACTGCTGCTGGC
CCTCGCCCTCGGGCTGACCGTTGCCGGCGGGGCGGCGCTGCTGCGCGGTCGTCTGCTCCGTGGTGCCTCGGGGCTGGCCG
GTGGGCTGATCCTGCTCGGCGGGTTGGGGACCGCCGGCGCCCTGGCACTGGGTGTGCTGGCCTACGAGCGGCTGGAGCAG
GAGCGTCCGGCGCTCGCCCTCCACTTCCAGCAGGTGGATGAGCAGCGCTACGTCGCCCGGTTGGCCTATCCCGACGGGGG
GACGGTCGCTCTGCCCCTGGCCGGGGATCAATGGCAGGTGGATGCCCGGGTTCTGCGTTGGAGCGGGTTCGCGGCCCTGC
TGGGGCTGGAGACCCGCTATCGGCTGGAGCGGATCAGCGGTCGTTACGCCGATCTGGAGGCGGAGCGCGCGGCCCCGCGC
ACGGTGCACGCCCTGGCGTCTCCCCAACGGGGTATCGATCCGTGGCTGCTGGGGCAGCGCCACGGCGATCGCCTGCCGTG
GGTGGATGCGGCCTACGGCAGTGCCGCCTATCTGCCCATGGCCGACGGCGCCGAGTACCGGGTGGCGGTGACCCGCAGTG
GTCTCGTTGCCCGACCGGCCAACGCCGAGGCCGAGGAGGCGGTCCGCCGCTGGTAG

Upstream 100 bases:

>100_bases
CGCGACGGCCCCGGCCGAGCGCTCCGGACACCATATACGCAATCACTCAGCGTATCATCCCGCATAGGTTACAGCGTCGC
GGGTTCGCGGGGGAGACCGC

Downstream 100 bases:

>100_bases
GCCTCAGTCCCGGGCCCAGCCGGCGCGGCCAACCCGCTGGCCGCGGCGGTCGAAGAGGAGGACCTCCACCTCGCTGCACG
CCGGGTCGATCAGGTTCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLGGLGTAGALALGVLAYERLEQ
ERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQVDARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPR
TVHALASPQRGIDPWLLGQRHGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW

Sequences:

>Translated_231_residues
MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLGGLGTAGALALGVLAYERLEQ
ERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQVDARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPR
TVHALASPQRGIDPWLLGQRHGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW
>Mature_231_residues
MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLGGLGTAGALALGVLAYERLEQ
ERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQVDARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPR
TVHALASPQRGIDPWLLGQRHGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24532; Mature: 24532

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE
GLGTAGALALGVLAYERLEQERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQV
CCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHEEEEECCCCCEEEEEECCCCEEH
DARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPRTVHALASPQRGIDPWLLGQR
HHEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHCCCCCCCCHHCCCCC
HGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW
CCCCCCEEECCCCCEEEEECCCCCCEEEEEECCCCEECCCCCCHHHHHHCC
>Mature Secondary Structure
MYGWLEAAAPISGFGWAGLALGALLLALALGLTVAGGAALLRGRLLRGASGLAGGLILLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE
GLGTAGALALGVLAYERLEQERPALALHFQQVDEQRYVARLAYPDGGTVALPLAGDQWQV
CCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHEEEEECCCCCEEEEEECCCCEEH
DARVLRWSGFAALLGLETRYRLERISGRYADLEAERAAPRTVHALASPQRGIDPWLLGQR
HHEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHCCCCCCCCHHCCCCC
HGDRLPWVDAAYGSAAYLPMADGAEYRVAVTRSGLVARPANAEAEEAVRRW
CCCCCCEEECCCCCEEEEECCCCCCEEEEEECCCCEECCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA