| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is crcB2 [H]
Identifier: 121998694
GI number: 121998694
Start: 2110317
End: 2110721
Strand: Reverse
Name: crcB2 [H]
Synonym: Hhal_1915
Alternate gene names: 121998694
Gene position: 2110721-2110317 (Counterclockwise)
Preceding gene: 121998695
Following gene: 121998693
Centisome position: 78.8
GC content: 72.59
Gene sequence:
>405_bases ATGGCGATGATGGCTGGTTTTGCAGGCGGCCTGGCGGTGGCCGCGGGCAGTGCCCTGGGGGGTGTCGCCCGCTTCTGGGT GGCGGCGCTGGTCAATCGGCGGCTGGGCGAGGCCTTCCCCTGGGGGACGCTGGTCGTCAACGCCTCCGGCGCGCTGCTGG CCGGCCTGCTGGCGGCGGTGCTGGCGGCCACAGGTGGCCTGGCCACGCTCGAGGGGCTGCTGCTGATCGGCTTCTGCGGC AGTTACACCACGGTCTCCTCCTTCGCCCTGCAGACCTTCACCCTTGTTCAGGCCGGGGGCTGGCCCCGGGCGGTCGGTAA CGTCTTCGCCACCCTGGCGCTGACTCTGTCCGGCGCCTGGCTCGGGCTGCAGGCGGGTGCGTTGATCCCGGGGGGCGGCG TATGA
Upstream 100 bases:
>100_bases GAACCGGAAATCCCTAGTCTAGCCGGGCTTGGTTCACGGGGAGCGAGCGGTGAAAGAGGTCCGACAAGTGGGTGCGTACA CCCGGGTGGCCAACTGACCC
Downstream 100 bases:
>100_bases GGATCACCCTCTGGGTGGCCGCCGGCAGCGCGCTGGGCGGGGTGAGCCGCTACGGCGTCGATGGGGTCATGGTGGCGGCC GGCTGGGTCGCCTTCCCCTG
Product: camphor resistance CrcB protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MAMMAGFAGGLAVAAGSALGGVARFWVAALVNRRLGEAFPWGTLVVNASGALLAGLLAAVLAATGGLATLEGLLLIGFCG SYTTVSSFALQTFTLVQAGGWPRAVGNVFATLALTLSGAWLGLQAGALIPGGGV
Sequences:
>Translated_134_residues MAMMAGFAGGLAVAAGSALGGVARFWVAALVNRRLGEAFPWGTLVVNASGALLAGLLAAVLAATGGLATLEGLLLIGFCG SYTTVSSFALQTFTLVQAGGWPRAVGNVFATLALTLSGAWLGLQAGALIPGGGV >Mature_133_residues AMMAGFAGGLAVAAGSALGGVARFWVAALVNRRLGEAFPWGTLVVNASGALLAGLLAAVLAATGGLATLEGLLLIGFCGS YTTVSSFALQTFTLVQAGGWPRAVGNVFATLALTLSGAWLGLQAGALIPGGGV
Specific function: Not Known. Overproduction Leads To Camphor Resistance And Chromosome Condensation; Deletion Increases Sensibility To Nucleoid Decondensation. Probably Interacts With The Heat-Shock Protein Cspe, Possibly Providing A Way To Anchor The Chromosome To The Mem
COG id: COG0239
COG function: function code D; Integral membrane protein possibly involved in chromosome condensation
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CrcB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003691 [H]
Pfam domain/function: PF02537 CRCB [H]
EC number: NA
Molecular weight: Translated: 13094; Mature: 12962
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMMAGFAGGLAVAAGSALGGVARFWVAALVNRRLGEAFPWGTLVVNASGALLAGLLAAV CCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH LAATGGLATLEGLLLIGFCGSYTTVSSFALQTFTLVQAGGWPRAVGNVFATLALTLSGAW HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH LGLQAGALIPGGGV HCCCCCCCCCCCCC >Mature Secondary Structure AMMAGFAGGLAVAAGSALGGVARFWVAALVNRRLGEAFPWGTLVVNASGALLAGLLAAV CCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH LAATGGLATLEGLLLIGFCGSYTTVSSFALQTFTLVQAGGWPRAVGNVFATLALTLSGAW HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH LGLQAGALIPGGGV HCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA