Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998665

Identifier: 121998665

GI number: 121998665

Start: 2071440

End: 2072741

Strand: Reverse

Name: 121998665

Synonym: Hhal_1886

Alternate gene names: NA

Gene position: 2072741-2071440 (Counterclockwise)

Preceding gene: 121998666

Following gene: 121998664

Centisome position: 77.39

GC content: 63.9

Gene sequence:

>1302_bases
ATGAGTCGACTCTTCGCCGGGCGGAGCGGGTGCAGCAGCCGCGTCGTGCAATCCGCCGTCGCTGTCGTGGCGATGGTCGG
GATCGCCACCGAGGCAAGCGCCATGAGCCGCTCCAATAATGTCGGCATGCATGTCGGCGACCGGCCCATGGGGATGGGCG
GCGCGGCGGCGGGGATCTCGGACGATCCCTCCGGTCTCTACTACAACCCCGCCGGCATCGTCTACGGCCACGCCCCGAAC
CTTTCGGCGAGCGTCAACGCGTTCCACATCACCAGCAATCGCTATGCCGATACGCTTGGCGAGGGCTCGGACTGGGAACG
GAACTCCGATGAGTTCCTGCCCAACTTCTTCGGTACCACCCAGCCCCTAGGCCCCGTCACGGTGGGCTTTTCTGTCGTCG
TCCCGCAGTCCGTTCGTGAGGAGCAGGCTCAGACCTTCGATGCGGATGCCATCGAACGCGATGCGGTGCAGGCGTTTTCC
ATCAATGTGGACAATGAAGACACCATCAACCGCTTGGGGCCGTCCATCGCCTTTGAGGTGAACGATCGGCTTTCACTGGG
CGCGTCCCTTCATCTCCACCAGCACGAGCGGCAGACCATTACCACCCAGGTGCTCCTGCTCGAGGACGAAGCCACTAGTG
CCCGGGACTACGAGGTGCAGAACCAGTACGTCACCAGCGAGCAGGTTGGAGTGAGTTGGCTGGTGGGAGCGATGTTCACC
CCGCTGGAGCGCGTGGCGATTGGGGTCAGCGTCCGGGGTACGGAGATCTTCGATGCGACCAACTCCACCCAGACGCTCTG
CCACGGGGCCGATGTTGAGGCGTACGAGGCCGATCACTTCTGCCAATCCGGCAGCGTGACCTTCCAGGATCGTACTGAGG
ATAGCGTGCGCGAGGCGTACCCGGTCGAGACCCGCGTCGGCGCTGCCTGGTTCGCGACGCAGCGTCTGCTCCTCGCCGCC
GATGTGATCCACTCCAGCGGCTTCGGGGGACGAGAGCCGGTCACCAATTTCGCGGCCGGTGCCGAGTACTACCTAACGGC
AGACTGGGCCATCCGGCTTGGCGGGTTCACGGACTTCTCCAATGTCGACGAGGTCGCCTACGACGGCTTTGACCATAGCG
TTGATCGATTCGGTGGCTCCCTGAGCCTGACCCGGTTTACCCAGAACACGTCCGTCTCCGTGGGCGTGACCGGCAGCTAC
GGCACCGGTGAGGCCTACATTATCGACGACCCCAACGTCGGTGCCCAGGACCTGACCAGCACCACCGCAACCCTGTTCCT
GGCGACGTCGTACTCCTACTAG

Upstream 100 bases:

>100_bases
TGGATGAACGGCTTCAAGCACTGGAGGGCTTCATGGTGGAGATGGGGCTGGCTGACGCGGAGCGACCGCGCATGGGCGAC
CGATTCCAGGAGAACATGCA

Downstream 100 bases:

>100_bases
CCGGAAGCCACAGCGTTCGCGAACTCATCAAGGATGGACAAAGCATGGCCATGCGATTCACAAGCACACCCCCGATGATC
GATTCGGTGCGCGGAATGCC

Product: aromatic hydrocarbon degradation membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MSRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGISDDPSGLYYNPAGIVYGHAPN
LSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTTQPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFS
INVDNEDTINRLGPSIAFEVNDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT
PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAYPVETRVGAAWFATQRLLLAA
DVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFSNVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSY
GTGEAYIIDDPNVGAQDLTSTTATLFLATSYSY

Sequences:

>Translated_433_residues
MSRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGISDDPSGLYYNPAGIVYGHAPN
LSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTTQPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFS
INVDNEDTINRLGPSIAFEVNDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT
PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAYPVETRVGAAWFATQRLLLAA
DVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFSNVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSY
GTGEAYIIDDPNVGAQDLTSTTATLFLATSYSY
>Mature_432_residues
SRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGISDDPSGLYYNPAGIVYGHAPNL
SASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTTQPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFSI
NVDNEDTINRLGPSIAFEVNDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFTP
LERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAYPVETRVGAAWFATQRLLLAAD
VIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFSNVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSYG
TGEAYIIDDPNVGAQDLTSTTATLFLATSYSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46405; Mature: 46274

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCC
DDPSGLYYNPAGIVYGHAPNLSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTT
CCCCCEEECCCEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHCCHHHCCCC
QPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFSINVDNEDTINRLGPSIAFEV
CCCCCEEECEEEECCHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCHHHHHCCCEEEEEE
NDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT
CCCEECCEEEEEEHHCCCEEEEEEEEEECCCCCCCCEECCCCEECHHHCCHHHHHHHHHC
PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAY
CHHHHEEEEEECCCEEEECCCCCCCEEECCCCCEECHHHHHCCCCEEECCCCCHHHHHCC
PVETRVGAAWFATQRLLLAADVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFS
CCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCCCC
NVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSYGTGEAYIIDDPNVGAQDLTS
CCHHHHHCCCCHHHHHCCCCEEEEEEECCCEEEEEEECCCCCCCEEEEECCCCCHHHHHH
TTATLFLATSYSY
CEEEEEEEEECCC
>Mature Secondary Structure 
SRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGIS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCC
DDPSGLYYNPAGIVYGHAPNLSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTT
CCCCCEEECCCEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHCCHHHCCCC
QPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFSINVDNEDTINRLGPSIAFEV
CCCCCEEECEEEECCHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCHHHHHCCCEEEEEE
NDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT
CCCEECCEEEEEEHHCCCEEEEEEEEEECCCCCCCCEECCCCEECHHHCCHHHHHHHHHC
PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAY
CHHHHEEEEEECCCEEEECCCCCCCEEECCCCCEECHHHHHCCCCEEECCCCCHHHHHCC
PVETRVGAAWFATQRLLLAADVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFS
CCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCCCC
NVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSYGTGEAYIIDDPNVGAQDLTS
CCHHHHHCCCCHHHHHCCCCEEEEEEECCCEEEEEEECCCCCCCEEEEECCCCCHHHHHH
TTATLFLATSYSY
CEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA