| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998641
Identifier: 121998641
GI number: 121998641
Start: 2035584
End: 2036465
Strand: Reverse
Name: 121998641
Synonym: Hhal_1862
Alternate gene names: NA
Gene position: 2036465-2035584 (Counterclockwise)
Preceding gene: 121998642
Following gene: 121998640
Centisome position: 76.03
GC content: 68.25
Gene sequence:
>882_bases ATGAGCCTCAGGCAGATCCTTTTCGCCAGTGATCTCTCGCCGCAGGCGGCGCTGGCCGGCGAGCGGGCCGCGCAGCTGGC CGGAGAGACCGGAGCAGGCCTTGGAGCGGTCTACGTCATCGACAGTGATATCCCCGCGGAGAGTGCCGATGGGCAACCCC GTGCCGCCGTCCGGCAGACAGCCGAGGCGGAGTTGCAGAACACGACTCCCGGGCAGTCAGCGTCGCTCCAGGTGCGTTTC GGCAATGTCCTCGGTGAGCTGGCCCAGGCCATCGAGGAGGAGCAGGCCGAGCTGCTGGTCGTCGGGGCCCACGGCCAGCA CTATGCGGCTGACTGGTTACTGGGGACCTCCGCCGAGCAGTTCGTCCGTCACCTGCCTGTCCCGACCCTGGTGGTCCGTA ATCCGGCAGAGCATCCTTATCGGCGTATCCTGGTGGCCACCGACTTCTCGGCCTGCGCCCGTGCGGCCCTGCAGCGGGTG GCCACCTGGTTCCCGGAGGCGGAACTGGAAGTGGTGCATGTCCTGGATACCCAGGCACTGGAGCAGATGCGGGCAGCGGG CGTGGGCGAGCGCTGGGTCGAACAGCGGTATGAGCGTCAGCGTGCTGCGGCCGAGTCGCGACTGCGCGAGGAGTTGACCG CCTGTGGATTGGGTCCGGGGCGGGTCACCGAGACCCTGCTCGCCGGCTATCCGGCGGAGGCGCTGCTTGGGCGCGTGCGA ACCGGACAGCCGCCCGATCTGGTGGTATTGGGCAACCACGGGCGCGGGCGCTGGGGCGATTTGCTGCTTGGGAGTGTCGC CAGCCGCGTTTTGCACCAGACCAGCAGGGACTTGATGCTGGTTCGTAGCGGCGAGACTTCGGGGGCTCCCACGGTCGGAT AA
Upstream 100 bases:
>100_bases GGGGACAGGGGCCTGATCGCATCCTGTTGCCCTTCGTCGATGCCGCGGAGATGGCCGTGGCCGGAATCACCGGGGGGCAG GAGAGAGGAGGGGGCGGACG
Downstream 100 bases:
>100_bases GGCCGCCGGGTCACCCCGCGCCAACCTTGAGGGGGTCGTGGTGGACGACGGCAGGGAAGCGACGACGAGGACCGAGGGCG AGACGGCGCGCTGTTGGCAT
Product: UspA domain-containing protein
Products: NA
Alternate protein names: UspA Domain-Containing Protein; UspA Domain Protein; Universal Stress Family Protein; Universal Stress Protein Family; UspA Protein; Usp Universal Stress Protein; Usp-Like Protein; Universal Stress Family
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSLRQILFASDLSPQAALAGERAAQLAGETGAGLGAVYVIDSDIPAESADGQPRAAVRQTAEAELQNTTPGQSASLQVRF GNVLGELAQAIEEEQAELLVVGAHGQHYAADWLLGTSAEQFVRHLPVPTLVVRNPAEHPYRRILVATDFSACARAALQRV ATWFPEAELEVVHVLDTQALEQMRAAGVGERWVEQRYERQRAAAESRLREELTACGLGPGRVTETLLAGYPAEALLGRVR TGQPPDLVVLGNHGRGRWGDLLLGSVASRVLHQTSRDLMLVRSGETSGAPTVG
Sequences:
>Translated_293_residues MSLRQILFASDLSPQAALAGERAAQLAGETGAGLGAVYVIDSDIPAESADGQPRAAVRQTAEAELQNTTPGQSASLQVRF GNVLGELAQAIEEEQAELLVVGAHGQHYAADWLLGTSAEQFVRHLPVPTLVVRNPAEHPYRRILVATDFSACARAALQRV ATWFPEAELEVVHVLDTQALEQMRAAGVGERWVEQRYERQRAAAESRLREELTACGLGPGRVTETLLAGYPAEALLGRVR TGQPPDLVVLGNHGRGRWGDLLLGSVASRVLHQTSRDLMLVRSGETSGAPTVG >Mature_292_residues SLRQILFASDLSPQAALAGERAAQLAGETGAGLGAVYVIDSDIPAESADGQPRAAVRQTAEAELQNTTPGQSASLQVRFG NVLGELAQAIEEEQAELLVVGAHGQHYAADWLLGTSAEQFVRHLPVPTLVVRNPAEHPYRRILVATDFSACARAALQRVA TWFPEAELEVVHVLDTQALEQMRAAGVGERWVEQRYERQRAAAESRLREELTACGLGPGRVTETLLAGYPAEALLGRVRT GQPPDLVVLGNHGRGRWGDLLLGSVASRVLHQTSRDLMLVRSGETSGAPTVG
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31360; Mature: 31229
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRQILFASDLSPQAALAGERAAQLAGETGAGLGAVYVIDSDIPAESADGQPRAAVRQT CCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHH AEAELQNTTPGQSASLQVRFGNVLGELAQAIEEEQAELLVVGAHGQHYAADWLLGTSAEQ HHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCHHH FVRHLPVPTLVVRNPAEHPYRRILVATDFSACARAALQRVATWFPEAELEVVHVLDTQAL HHHHCCCCEEEECCCCCCCHHEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH EQMRAAGVGERWVEQRYERQRAAAESRLREELTACGLGPGRVTETLLAGYPAEALLGRVR HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHC TGQPPDLVVLGNHGRGRWGDLLLGSVASRVLHQTSRDLMLVRSGETSGAPTVG CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure SLRQILFASDLSPQAALAGERAAQLAGETGAGLGAVYVIDSDIPAESADGQPRAAVRQT CHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHH AEAELQNTTPGQSASLQVRFGNVLGELAQAIEEEQAELLVVGAHGQHYAADWLLGTSAEQ HHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCHHH FVRHLPVPTLVVRNPAEHPYRRILVATDFSACARAALQRVATWFPEAELEVVHVLDTQAL HHHHCCCCEEEECCCCCCCHHEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH EQMRAAGVGERWVEQRYERQRAAAESRLREELTACGLGPGRVTETLLAGYPAEALLGRVR HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHC TGQPPDLVVLGNHGRGRWGDLLLGSVASRVLHQTSRDLMLVRSGETSGAPTVG CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA