Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998631

Identifier: 121998631

GI number: 121998631

Start: 2024066

End: 2025421

Strand: Reverse

Name: 121998631

Synonym: Hhal_1852

Alternate gene names: NA

Gene position: 2025421-2024066 (Counterclockwise)

Preceding gene: 121998640

Following gene: 121998629

Centisome position: 75.62

GC content: 67.11

Gene sequence:

>1356_bases
ATGCAGAGAAAGCCAGCCAGCATGACCCTGAACGTAACGGAAAGGCATCAGGCCAGTGAGCCCGTCCTGGGCGCGTATAA
CGATCACCCCCTGCGCCTGGAGGTCAACGACGAGATCCACGCCCGTCCCTACGAGCGGCTGCGGGCGCCGGCGCGGGTCA
GCCACCTGGGGATGTTCTCCGGGCGCCACTCCGCCGATGCCGATCGGGCGGCAGTGGCCGATCTCTGCGAGCGCTTCGGG
GTGGAGCCGCCGGAGCCGGATGCCCAGCACATGTCCCGCGACTTCGGGCCCTTCCGACTGAAGTGGGAGCGGCGCACCGA
GGTCTCGACCTACACCTTCATCGTCGAAGACGACTTCGAGCACCCCTTCGAAGGGCCGCCGATCGAGCGGGTGCCCGAGG
ATTGGCTGGCCAGTCTGCCCGGGCCGCGGCTGGTGGGTATCCACCTCGCCCTGGAACCGTCCTGGTCGCAGCCACGGACC
AGCAGCGGGATCGTGGCGCTGTTCAACGACAACACCATCGTCGGCAGCCAGATCGCCGGCGGCGCAGCGCGGGTCTGGAC
CGACTTCCGAATCCACGAAGACGGTTTCTCGCGCATCCTTCTGCGCGATGTGAACATGCGCGAGCGCCAGGCGGGCCGTG
CCATCCAGCGCCTGCTGGAGATCGAGACCTATCGCATGATGGCGCTGCTCGCCTTTCCCGTGGCGCGACGCCTCAACCCG
CAGCTCAATGAGCTCGAGGAGCAGCTCGCGAGCATTACCGAGCGCATGACCGGTTCAACCCGGGAGCGTGACGAGCAGAA
CCTGCTCAGCCAGCTGATGGAGCTGGCCGCGCAGGTTGAGCGTATCGGCAACAACACCAACTACCGGTTTCACGCCGCGC
GCGCCTACCACGAGCTGGTCGAGCGGCGCATTCAGGAGCTGCGCGAGCAGCGTATCCAGGGGGTGCAGACCATCCAGGAG
TTTATGGAGCGCCGCCTGGTTCCGGCCATGCGTACCTGCGATACGGTGGCCGAGCGGCGAGGGTCGCTCTCCGAGCGCAT
CTCGCGCACCGGCGACCTACTGCGCACCCGGATCGACGTCGCCCTGGAGGCGCAGAACCGGGATCTGCTCGACTCCATGG
ATCGCCGCGCTAAGCTGCAGTTTCGCTTGCAGGAGACCGTCGAGGGGCTCTCCGTGGCGGCCATCAGTTACTACCTGATG
GGCCTGATCAGCTATGTGTTGCAGGCGGCGCGGGACGCCGGCGCGCCCGTCCGCGTGGAGATCACCCAGGGCCTGGCGGT
GCCGGTGGTGGTCTTCACCATCTGGTTGGTGGTGCGCTTGGTGCGCTACCGCATCGCCAAGCGCCAGGAGGGGTAG

Upstream 100 bases:

>100_bases
CCGCCCAGGATGAGCTCCCGCATGCTGTTCCCCCTGGCAAGGGCCCGGCACAATAACATACCCTTGCGGCTGCCCGGTTC
AACCCGGGGTCGCCCGCCCG

Downstream 100 bases:

>100_bases
CGCCGCGCCGGCCGGCGCGGCGCCAGTCGCGGATCAGTCCTCCGTCCGGTCGGTGGCCGTGTCGGTGTGGGTTTCGCTGG
TGTGCCAGTCCGACTCGACC

Product: membrane anchored protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFSGRHSADADRAAVADLCERFG
VEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFEHPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRT
SSGIVALFNDNTIVGSQIAGGAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP
QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELVERRIQELREQRIQGVQTIQE
FMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDVALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLM
GLISYVLQAARDAGAPVRVEITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG

Sequences:

>Translated_451_residues
MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFSGRHSADADRAAVADLCERFG
VEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFEHPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRT
SSGIVALFNDNTIVGSQIAGGAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP
QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELVERRIQELREQRIQGVQTIQE
FMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDVALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLM
GLISYVLQAARDAGAPVRVEITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG
>Mature_451_residues
MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFSGRHSADADRAAVADLCERFG
VEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFEHPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRT
SSGIVALFNDNTIVGSQIAGGAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP
QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELVERRIQELREQRIQGVQTIQE
FMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDVALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLM
GLISYVLQAARDAGAPVRVEITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG

Specific function: Unknown

COG id: COG4949

COG function: function code S; Uncharacterized membrane-anchored protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51665; Mature: 51665

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFS
CCCCCCCEEEEEHHHHCCCCCCEECCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHCC
GRHSADADRAAVADLCERFGVEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFE
CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCC
HPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRTSSGIVALFNDNTIVGSQIAG
CCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEECCCCCC
GAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP
CHHHHHEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELV
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
ERRIQELREQRIQGVQTIQEFMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLMGLISYVLQAARDAGAPVRVE
HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFS
CCCCCCCEEEEEHHHHCCCCCCEECCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHCC
GRHSADADRAAVADLCERFGVEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFE
CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCC
HPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRTSSGIVALFNDNTIVGSQIAG
CCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEECCCCCC
GAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP
CHHHHHEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELV
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
ERRIQELREQRIQGVQTIQEFMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLMGLISYVLQAARDAGAPVRVE
HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA