| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998552
Identifier: 121998552
GI number: 121998552
Start: 1946449
End: 1946946
Strand: Reverse
Name: 121998552
Synonym: Hhal_1773
Alternate gene names: NA
Gene position: 1946946-1946449 (Counterclockwise)
Preceding gene: 121998553
Following gene: 121998550
Centisome position: 72.69
GC content: 69.68
Gene sequence:
>498_bases GTGCGGGCTGGCTGTGGAGGTGCGGTGCTGATCCGCGCCGCAGAGCGGGTAATGTTGACGGTGCTGGCCGGCGCGCTGTG GAGCGGTGGCTACATCGTCTCTCCGCTGCTGTTCCGCACCCTGGAAGACACCGCGCAGGCGGCGGCATTGGTTGGCGAGG TCACCGGGACGGCGGTCTGGGTGGTGCTGGTCTGTGCTGCGCTGCTGATCGCGACTCAGCTGCGCCACCGGATTCGTCCG CTGGCCGCACACTGGCGCCTTTGGCTGCTGGTGCTGCTGACCGTGGTGGTGGCCGTGGGGGAGTTCTGGGTCCGGCCGCC AATGGCGGCGTTGACCGAGCAGGCCGGCGAGGTCGGGTACCTCTCGGCCCTGCGCGCCGCCGAGAGCCTTTACATGGTCG CTAGCGCCATGGCACTGGTCCTGGTCGCCGGCGGAATCGAGCCGCGGCAACCGGAAGAAGGCGAAGAGACACCGAGCAGC GAGGATGCCGGCCGCTGA
Upstream 100 bases:
>100_bases CCTGATCGGCAAGGAGGAGGGTGACGAGGCTGTGGTTCAGGCCCCGGGCGGAGAGCGGACCTACGAGATCGTCGAGGTTC GGTATGAATAGTCCCGGACG
Downstream 100 bases:
>100_bases GCGGCTAGATCAGGACTTGGCTCTTCTCGGGGTTTTCCTGGTAGAGGAGCACGATGCGCCCGATGGTCTGCACCACGACG GCGCCGGTCTGCTCTGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MRAGCGGAVLIRAAERVMLTVLAGALWSGGYIVSPLLFRTLEDTAQAAALVGEVTGTAVWVVLVCAALLIATQLRHRIRP LAAHWRLWLLVLLTVVVAVGEFWVRPPMAALTEQAGEVGYLSALRAAESLYMVASAMALVLVAGGIEPRQPEEGEETPSS EDAGR
Sequences:
>Translated_165_residues MRAGCGGAVLIRAAERVMLTVLAGALWSGGYIVSPLLFRTLEDTAQAAALVGEVTGTAVWVVLVCAALLIATQLRHRIRP LAAHWRLWLLVLLTVVVAVGEFWVRPPMAALTEQAGEVGYLSALRAAESLYMVASAMALVLVAGGIEPRQPEEGEETPSS EDAGR >Mature_165_residues MRAGCGGAVLIRAAERVMLTVLAGALWSGGYIVSPLLFRTLEDTAQAAALVGEVTGTAVWVVLVCAALLIATQLRHRIRP LAAHWRLWLLVLLTVVVAVGEFWVRPPMAALTEQAGEVGYLSALRAAESLYMVASAMALVLVAGGIEPRQPEEGEETPSS EDAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17475; Mature: 17475
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAGCGGAVLIRAAERVMLTVLAGALWSGGYIVSPLLFRTLEDTAQAAALVGEVTGTAVW CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLVCAALLIATQLRHRIRPLAAHWRLWLLVLLTVVVAVGEFWVRPPMAALTEQAGEVGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHH LSALRAAESLYMVASAMALVLVAGGIEPRQPEEGEETPSSEDAGR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRAGCGGAVLIRAAERVMLTVLAGALWSGGYIVSPLLFRTLEDTAQAAALVGEVTGTAVW CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLVCAALLIATQLRHRIRPLAAHWRLWLLVLLTVVVAVGEFWVRPPMAALTEQAGEVGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHH LSALRAAESLYMVASAMALVLVAGGIEPRQPEEGEETPSSEDAGR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA