| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998504
Identifier: 121998504
GI number: 121998504
Start: 1892127
End: 1893653
Strand: Reverse
Name: 121998504
Synonym: Hhal_1725
Alternate gene names: NA
Gene position: 1893653-1892127 (Counterclockwise)
Preceding gene: 121998506
Following gene: 121998503
Centisome position: 70.7
GC content: 67.52
Gene sequence:
>1527_bases GTGACGGATCGGATCCCTGACCTGGAGGCCCACCGGGCCCTGGCCGAGGCACTCCAGGCCCCGGAGTGCTACCCGTGGCC GGTGGACACTGTCGAGTGTATCGAGACCCACATCTCCACGGTGCTGCTCGCCGGGGCGTACGTGGTCAAGCTCAAGAAAC CGCTGGACCTCGGCTTCCTGGACTTCTCCAGCCTGGAGCGGCGACGCTACTTCTGCGACGAAGAGGTTCGCCTCAACGGC CGCTTGGCTCCGCAGATCTACCTGCGCCGAGTGGCAATCGCCGGTCCGGCGACGGAGCCGCGCATCGACGGCGAAGGGGA CGTGCTGGAGTACGCGGTGCTCATGCGCCGCTTCCCCGAGAATGAGCTCATGAGCCGTCTGCTGCGCGAGGGGCGTCTGC CCCATGGAGCCGTCGAGCGCCTGGCTGAGACTGTGGCGCGGTTCCATGCCGGGCTGCCGGCCGCCGGGGAGGATAGTGAA TACGGGTCGCCGGAGGCCGTGGCCGATCCCATGCGTGACAACTTCCGCGCCCTGGAGACCCAGTCCGCGGCCGCCTCGAT GCGCGGCGAACTGCGTGCCCTGGAGCGCTGGACCGAGGCACAGCTGCAGCGGCTGGAGCCGCTGATCCGCCGGCGACGCG CCGAGGGCGCGGTGCGTGAATGCCACGGGGACCTGCACTTGGGCAATGTCGCCTGGCATGAGGACGACCTGATCATCTTT GATGGCATCGAGTTCAATCCGGCACTGCGCTGGATCGACACGGCCAGCGAGGTCGCCTTCACCGTTATGGATCTGGATTT TGAAGGGGCCCGTCGGCTTCGCCACTGCTTCCTGGACCGCTACCTGGAGCAGAGTGGCGACTACCAGGCGCTGCCGCTGC TGCCCCTGTACGCCGTGTATCGGGCCCTGGTGCGGGCCAAGATCAACGGCCACGAGGTCGAACAGGGGGGTGGCAGTGCA GCCCAGGAGGCGCTCTGCGACCACGTCCAACTGGCCAAGAGCTATACGGTGGCGCAGGTGCCGGAGTTGGTCATTACCTA CGGGTTATCGGGATCCGGCAAGAGCGTACGCGCCCGCCGACTGGTCGAGGAGCGCGGGTTTATCCGGCTGCGATCGGATG TCGAGCGCAAGCGGCTGTTCGGTTTGGAGCCCCGCGCGCGCTCGGACTCGACCCTGGATAGCGGGCTCTATTCGCCGGAG GCAACGTGGCGGACTTACGAACGACTGCAGGAGCAGGCCGAGGGCGCCCTGGAAGCCGGCTTTTCGGTGGTGGTGGATGC CGCCTTCCTCAAGGCCGAGCGACGCCGGCCGTTCCTGGAGCTGGCTGCGCGCACCGGATGTCGATTTCGGATCCTGCATG TTCGGGCCGACGAACAGACCCTGCGGGAACGCCTGCGCAAGCGGCTGGCCGAGGGGCGCGATCCCTCCGAGGCCGATGAG ACGGTGCTCGATGCTCAGCTGCGTACAGCGCAACCGCCGTCCGGCGAGGAAGCGGCTTTCGTCGAAACCGTCGACGCGGA CGGGTAA
Upstream 100 bases:
>100_bases GTTTCATTCTGTTCGATCATAGGGGAGAGGATACAGGCTGGAGCCGGGCGGCTGAAGCCGGCAAGCTGGGCAGGTCGAGC AACAGAAGGAGTGCGCAGCC
Downstream 100 bases:
>100_bases GATAGCCGGCCTTGCCTTGTGCCGGATCGAGGAGAGCTATGTCAGGAGTCCCCAGCCAACCCGGTGAGCCGGTGACCGAT GTCGCGCAGCTGGCAGAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 508; Mature: 507
Protein sequence:
>508_residues MTDRIPDLEAHRALAEALQAPECYPWPVDTVECIETHISTVLLAGAYVVKLKKPLDLGFLDFSSLERRRYFCDEEVRLNG RLAPQIYLRRVAIAGPATEPRIDGEGDVLEYAVLMRRFPENELMSRLLREGRLPHGAVERLAETVARFHAGLPAAGEDSE YGSPEAVADPMRDNFRALETQSAAASMRGELRALERWTEAQLQRLEPLIRRRRAEGAVRECHGDLHLGNVAWHEDDLIIF DGIEFNPALRWIDTASEVAFTVMDLDFEGARRLRHCFLDRYLEQSGDYQALPLLPLYAVYRALVRAKINGHEVEQGGGSA AQEALCDHVQLAKSYTVAQVPELVITYGLSGSGKSVRARRLVEERGFIRLRSDVERKRLFGLEPRARSDSTLDSGLYSPE ATWRTYERLQEQAEGALEAGFSVVVDAAFLKAERRRPFLELAARTGCRFRILHVRADEQTLRERLRKRLAEGRDPSEADE TVLDAQLRTAQPPSGEEAAFVETVDADG
Sequences:
>Translated_508_residues MTDRIPDLEAHRALAEALQAPECYPWPVDTVECIETHISTVLLAGAYVVKLKKPLDLGFLDFSSLERRRYFCDEEVRLNG RLAPQIYLRRVAIAGPATEPRIDGEGDVLEYAVLMRRFPENELMSRLLREGRLPHGAVERLAETVARFHAGLPAAGEDSE YGSPEAVADPMRDNFRALETQSAAASMRGELRALERWTEAQLQRLEPLIRRRRAEGAVRECHGDLHLGNVAWHEDDLIIF DGIEFNPALRWIDTASEVAFTVMDLDFEGARRLRHCFLDRYLEQSGDYQALPLLPLYAVYRALVRAKINGHEVEQGGGSA AQEALCDHVQLAKSYTVAQVPELVITYGLSGSGKSVRARRLVEERGFIRLRSDVERKRLFGLEPRARSDSTLDSGLYSPE ATWRTYERLQEQAEGALEAGFSVVVDAAFLKAERRRPFLELAARTGCRFRILHVRADEQTLRERLRKRLAEGRDPSEADE TVLDAQLRTAQPPSGEEAAFVETVDADG >Mature_507_residues TDRIPDLEAHRALAEALQAPECYPWPVDTVECIETHISTVLLAGAYVVKLKKPLDLGFLDFSSLERRRYFCDEEVRLNGR LAPQIYLRRVAIAGPATEPRIDGEGDVLEYAVLMRRFPENELMSRLLREGRLPHGAVERLAETVARFHAGLPAAGEDSEY GSPEAVADPMRDNFRALETQSAAASMRGELRALERWTEAQLQRLEPLIRRRRAEGAVRECHGDLHLGNVAWHEDDLIIFD GIEFNPALRWIDTASEVAFTVMDLDFEGARRLRHCFLDRYLEQSGDYQALPLLPLYAVYRALVRAKINGHEVEQGGGSAA QEALCDHVQLAKSYTVAQVPELVITYGLSGSGKSVRARRLVEERGFIRLRSDVERKRLFGLEPRARSDSTLDSGLYSPEA TWRTYERLQEQAEGALEAGFSVVVDAAFLKAERRRPFLELAARTGCRFRILHVRADEQTLRERLRKRLAEGRDPSEADET VLDAQLRTAQPPSGEEAAFVETVDADG
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 57203; Mature: 57072
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRIPDLEAHRALAEALQAPECYPWPVDTVECIETHISTVLLAGAYVVKLKKPLDLGFL CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC DFSSLERRRYFCDEEVRLNGRLAPQIYLRRVAIAGPATEPRIDGEGDVLEYAVLMRRFPE CHHHHHHHHHCCCCHHEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCH NELMSRLLREGRLPHGAVERLAETVARFHAGLPAAGEDSEYGSPEAVADPMRDNFRALET HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH QSAAASMRGELRALERWTEAQLQRLEPLIRRRRAEGAVRECHGDLHLGNVAWHEDDLIIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCEEEECCCEEEE DGIEFNPALRWIDTASEVAFTVMDLDFEGARRLRHCFLDRYLEQSGDYQALPLLPLYAVY CCCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH RALVRAKINGHEVEQGGGSAAQEALCDHVQLAKSYTVAQVPELVITYGLSGSGKSVRARR HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCHHHEEECCCCCCCHHHHHH LVEERGFIRLRSDVERKRLFGLEPRARSDSTLDSGLYSPEATWRTYERLQEQAEGALEAG HHHHCCCEEEHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCC FSVVVDAAFLKAERRRPFLELAARTGCRFRILHVRADEQTLRERLRKRLAEGRDPSEADE HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHH TVLDAQLRTAQPPSGEEAAFVETVDADG HHHHHHHHCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure TDRIPDLEAHRALAEALQAPECYPWPVDTVECIETHISTVLLAGAYVVKLKKPLDLGFL CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC DFSSLERRRYFCDEEVRLNGRLAPQIYLRRVAIAGPATEPRIDGEGDVLEYAVLMRRFPE CHHHHHHHHHCCCCHHEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCH NELMSRLLREGRLPHGAVERLAETVARFHAGLPAAGEDSEYGSPEAVADPMRDNFRALET HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH QSAAASMRGELRALERWTEAQLQRLEPLIRRRRAEGAVRECHGDLHLGNVAWHEDDLIIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCEEEECCCEEEE DGIEFNPALRWIDTASEVAFTVMDLDFEGARRLRHCFLDRYLEQSGDYQALPLLPLYAVY CCCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH RALVRAKINGHEVEQGGGSAAQEALCDHVQLAKSYTVAQVPELVITYGLSGSGKSVRARR HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCHHHEEECCCCCCCHHHHHH LVEERGFIRLRSDVERKRLFGLEPRARSDSTLDSGLYSPEATWRTYERLQEQAEGALEAG HHHHCCCEEEHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCC FSVVVDAAFLKAERRRPFLELAARTGCRFRILHVRADEQTLRERLRKRLAEGRDPSEADE HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHH TVLDAQLRTAQPPSGEEAAFVETVDADG HHHHHHHHCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]