Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998467

Identifier: 121998467

GI number: 121998467

Start: 1842764

End: 1843348

Strand: Reverse

Name: 121998467

Synonym: Hhal_1688

Alternate gene names: NA

Gene position: 1843348-1842764 (Counterclockwise)

Preceding gene: 121998469

Following gene: 121998466

Centisome position: 68.82

GC content: 63.08

Gene sequence:

>585_bases
ATGTACCGCAAGACTGCCGCTTCCGCGATTGTCCTGATGCTCGCCACCTCAGGTGCCTACGCTCAGATGGCCCCCGATGA
GGGACAGGGCATGCAGCCGCAGATGTCCGAGGGCCAGCAGCGCATGCAGGAGATCCAGCAGCAGCTGGGCCAGATGCAGC
AGGACACCCTCGAGTCCAACCCGGAGCTGGAAGAGCGCGCCGAGGAGCTGGATGACCGGCTGCTGGACCAGATGGAAGAC
ATGGGCTACGACAATGTCCGCCAGGACATCGAGCGCCTGGAAGAGACCATGGAGGCGATGCACTCCGGCGAGATGTCCCA
GGAGGAGGTCCAGCAGCGCATGCAGGAGGATCAGCAGATCCACATGGAGCTGCAGCAGGCCCAGCAGGAGGCCATGCAGG
ATGAGGACTTTGTCCAGCCGTGGCAGGAGGACCGCCAGCAGCTGGAGCAGGACCTAATCGACACCATGTACGACGAGAAT
CCTCAGGCCGAGGACCTGATGCAGGAGATGGAGGAACTGCAGGCTGAGATGCAGCAGGGCATGGGCGGTCAGCAGCAGAT
GCCCGAGGGGGAGATGCCCCAGTAA

Upstream 100 bases:

>100_bases
CCGCGGGGGTCCGGAACCATTTGCCCCTGGGCGCTGTCTTCCGGGGTAAGGCCGTTGCGACGGTTTGAACGCACCGAACT
GGTTTGACGAGGAGTCGTTT

Downstream 100 bases:

>100_bases
ACCCCAAAACCTGGGATAGAGGTGCGCCGTCGGCGTCGGGTGCTAACATAGGCCGGCGCGGTAGCGACCTGGCCGCTTCC
GTGGTGGGAATAGCTAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESNPELEERAEELDDRLLDQMED
MGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQIHMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDEN
PQAEDLMQEMEELQAEMQQGMGGQQQMPEGEMPQ

Sequences:

>Translated_194_residues
MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESNPELEERAEELDDRLLDQMED
MGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQIHMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDEN
PQAEDLMQEMEELQAEMQQGMGGQQQMPEGEMPQ
>Mature_194_residues
MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESNPELEERAEELDDRLLDQMED
MGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQIHMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDEN
PQAEDLMQEMEELQAEMQQGMGGQQQMPEGEMPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22660; Mature: 22660

Theoretical pI: Translated: 3.54; Mature: 3.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
11.3 %Met     (Translated Protein)
11.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
11.3 %Met     (Mature Protein)
11.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESN
CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PELEERAEELDDRLLDQMEDMGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQI
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
HMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDENPQAEDLMQEMEELQAEMQQG
HHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
MGGQQQMPEGEMPQ
CCCCCCCCCCCCCC
>Mature Secondary Structure
MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESN
CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PELEERAEELDDRLLDQMEDMGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQI
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
HMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDENPQAEDLMQEMEELQAEMQQG
HHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
MGGQQQMPEGEMPQ
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA