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The map label for this gene is ybbK [C]

Identifier: 121998439

GI number: 121998439

Start: 1814373

End: 1815185

Strand: Reverse

Name: ybbK [C]

Synonym: Hhal_1660

Alternate gene names: 121998439

Gene position: 1815185-1814373 (Counterclockwise)

Preceding gene: 121998446

Following gene: 121998438

Centisome position: 67.77

GC content: 63.84

Gene sequence:

>813_bases
ATGGAAACCGTTCTGATCGTCGTCCTCGCCGTCCTGCTGGCGATCGCCGTCTCGGCGATTCGCGTCCTACGCGAGTACGA
ACGAGGCGTCATCTTCCAGCTCGGGCGTTTCTGGAGCGTCAAGGGCCCGGGCCTGATCCTGGTCATTCCCTTTATCCAGC
AGATGGTCCGGGTCGACCTGCGCACGGTGGTGATGGATGTGCCGAGCCAGGACGTCATCTCCCGGGACAACGTCTCAGTG
GGTGTCAATGCGGTTCTCTACTTCCGCGTCATCGACCCGCAGCGGGCCATCATCAATGTCGAGGACTTCCTCTCGGCGGT
CAGCCAGCTGGCTCAGACGACACTGCGTTCCGTGCTCGGTCAGCATGAACTGGATGAGATGCTGGCCGAGCGTGACAAGC
TCAACGCCCATATCCAGGAGATCCTCGACCAGCAGACGGACTACTGGGGCGTGAAGGTGGCGAATGTGGAGATCAAGCAC
GTCGACATCGACGAGTCGATGATTCGCGCCATCGCCCAGCAGGCCGAGGCCGAGCGCGCTCGCCGGGCCAAGGTGATCCA
TGCCGAGGGCGAGATGCAGGCGGCCGAGAAACTCCGTGATGCGGCCGAGGTGCTCGGTCAGAGTCCGGCCTCGCTGCAGC
TGCGCTACCTGCAGACGCTGGTTACCGTGGCCAACGAGAACGAAAGTTCCTCGATCGTCTTCCCGCTGCCGCTGGAGCTG
CTGCGTGCCTTCGGCTATAGCGAGAGCCACGGGCCGGTAGCCGGTCCGCAGAGCGGCGGTACGGCCGAGACCGGTGGTGG
AGGTACGCGCTGA

Upstream 100 bases:

>100_bases
GCCTTGCAATTCCATGTCGCCATTATACGGGTGGCGAGGCTCGGTCGGGGGCGACTATGCTGGGCAGAGGTGAACACGCC
GTGCTAAGGGGGTTGGACCC

Downstream 100 bases:

>100_bases
CGCGGCGGCAACGCACCGGGGCAGAGGGAGGCGAGCGCCGGGGGCGGGCGCGGGAGCGGCCGCCCCCGGCGCCGGCGGAT
GCCGCCCAGATCGAGGGGTT

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
METVLIVVLAVLLAIAVSAIRVLREYERGVIFQLGRFWSVKGPGLILVIPFIQQMVRVDLRTVVMDVPSQDVISRDNVSV
GVNAVLYFRVIDPQRAIINVEDFLSAVSQLAQTTLRSVLGQHELDEMLAERDKLNAHIQEILDQQTDYWGVKVANVEIKH
VDIDESMIRAIAQQAEAERARRAKVIHAEGEMQAAEKLRDAAEVLGQSPASLQLRYLQTLVTVANENESSSIVFPLPLEL
LRAFGYSESHGPVAGPQSGGTAETGGGGTR

Sequences:

>Translated_270_residues
METVLIVVLAVLLAIAVSAIRVLREYERGVIFQLGRFWSVKGPGLILVIPFIQQMVRVDLRTVVMDVPSQDVISRDNVSV
GVNAVLYFRVIDPQRAIINVEDFLSAVSQLAQTTLRSVLGQHELDEMLAERDKLNAHIQEILDQQTDYWGVKVANVEIKH
VDIDESMIRAIAQQAEAERARRAKVIHAEGEMQAAEKLRDAAEVLGQSPASLQLRYLQTLVTVANENESSSIVFPLPLEL
LRAFGYSESHGPVAGPQSGGTAETGGGGTR
>Mature_270_residues
METVLIVVLAVLLAIAVSAIRVLREYERGVIFQLGRFWSVKGPGLILVIPFIQQMVRVDLRTVVMDVPSQDVISRDNVSV
GVNAVLYFRVIDPQRAIINVEDFLSAVSQLAQTTLRSVLGQHELDEMLAERDKLNAHIQEILDQQTDYWGVKVANVEIKH
VDIDESMIRAIAQQAEAERARRAKVIHAEGEMQAAEKLRDAAEVLGQSPASLQLRYLQTLVTVANENESSSIVFPLPLEL
LRAFGYSESHGPVAGPQSGGTAETGGGGTR

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=245, Percent_Identity=47.3469387755102, Blast_Score=210, Evalue=1e-54,
Organism=Homo sapiens, GI21686995, Length=245, Percent_Identity=47.3469387755102, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI38016911, Length=235, Percent_Identity=45.9574468085106, Blast_Score=202, Evalue=4e-52,
Organism=Homo sapiens, GI7657615, Length=246, Percent_Identity=34.9593495934959, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI7305503, Length=170, Percent_Identity=39.4117647058824, Blast_Score=133, Evalue=1e-31,
Organism=Homo sapiens, GI20149563, Length=140, Percent_Identity=33.5714285714286, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI38016907, Length=68, Percent_Identity=55.8823529411765, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1786697, Length=189, Percent_Identity=37.037037037037, Blast_Score=139, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17569493, Length=273, Percent_Identity=39.9267399267399, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI25153583, Length=246, Percent_Identity=45.5284552845528, Blast_Score=203, Evalue=7e-53,
Organism=Caenorhabditis elegans, GI71987612, Length=246, Percent_Identity=45.5284552845528, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17569497, Length=237, Percent_Identity=42.1940928270042, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17569499, Length=245, Percent_Identity=46.9387755102041, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=241, Percent_Identity=46.4730290456432, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI193209764, Length=245, Percent_Identity=42.0408163265306, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17570459, Length=246, Percent_Identity=44.7154471544715, Blast_Score=195, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17570161, Length=242, Percent_Identity=44.2148760330579, Blast_Score=194, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI193210507, Length=242, Percent_Identity=44.2148760330579, Blast_Score=194, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI32566490, Length=224, Percent_Identity=47.7678571428571, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=228, Percent_Identity=45.6140350877193, Blast_Score=186, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=48.3333333333333, Blast_Score=151, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=50.8474576271186, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI32564147, Length=182, Percent_Identity=34.6153846153846, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=163, Percent_Identity=28.2208588957055, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI45556022, Length=251, Percent_Identity=47.808764940239, Blast_Score=220, Evalue=1e-57,
Organism=Drosophila melanogaster, GI18860517, Length=253, Percent_Identity=45.8498023715415, Blast_Score=207, Evalue=7e-54,
Organism=Drosophila melanogaster, GI24657857, Length=244, Percent_Identity=47.9508196721311, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI281365664, Length=244, Percent_Identity=47.9508196721311, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI62484448, Length=244, Percent_Identity=47.9508196721311, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI62484274, Length=244, Percent_Identity=47.9508196721311, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI21356845, Length=239, Percent_Identity=38.4937238493724, Blast_Score=184, Evalue=4e-47,
Organism=Drosophila melanogaster, GI28573263, Length=248, Percent_Identity=37.5, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI281361633, Length=241, Percent_Identity=36.5145228215768, Blast_Score=174, Evalue=4e-44,
Organism=Drosophila melanogaster, GI281361631, Length=241, Percent_Identity=36.5145228215768, Blast_Score=174, Evalue=5e-44,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=38.3783783783784, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI45550506, Length=169, Percent_Identity=36.6863905325444, Blast_Score=125, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29661; Mature: 29661

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVLIVVLAVLLAIAVSAIRVLREYERGVIFQLGRFWSVKGPGLILVIPFIQQMVRVDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCEEECCCCCEEEEHHHHHHHHHHHH
RTVVMDVPSQDVISRDNVSVGVNAVLYFRVIDPQRAIINVEDFLSAVSQLAQTTLRSVLG
HHHHHCCCCHHHHCCCCCCCCCEEEEEEEEECCCHHEECHHHHHHHHHHHHHHHHHHHHC
QHELDEMLAERDKLNAHIQEILDQQTDYWGVKVANVEIKHVDIDESMIRAIAQQAEAERA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
RRAKVIHAEGEMQAAEKLRDAAEVLGQSPASLQLRYLQTLVTVANENESSSIVFPLPLEL
HHHHEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
LRAFGYSESHGPVAGPQSGGTAETGGGGTR
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METVLIVVLAVLLAIAVSAIRVLREYERGVIFQLGRFWSVKGPGLILVIPFIQQMVRVDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCEEECCCCCEEEEHHHHHHHHHHHH
RTVVMDVPSQDVISRDNVSVGVNAVLYFRVIDPQRAIINVEDFLSAVSQLAQTTLRSVLG
HHHHHCCCCHHHHCCCCCCCCCEEEEEEEEECCCHHEECHHHHHHHHHHHHHHHHHHHHC
QHELDEMLAERDKLNAHIQEILDQQTDYWGVKVANVEIKHVDIDESMIRAIAQQAEAERA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
RRAKVIHAEGEMQAAEKLRDAAEVLGQSPASLQLRYLQTLVTVANENESSSIVFPLPLEL
HHHHEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
LRAFGYSESHGPVAGPQSGGTAETGGGGTR
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]