| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998425
Identifier: 121998425
GI number: 121998425
Start: 1797896
End: 1798861
Strand: Reverse
Name: 121998425
Synonym: Hhal_1646
Alternate gene names: NA
Gene position: 1798861-1797896 (Counterclockwise)
Preceding gene: 121998428
Following gene: 121998423
Centisome position: 67.16
GC content: 67.81
Gene sequence:
>966_bases TTGCTGAATCGTGCGCTGCTTTCGGGTCTTGTGGCTGGCATTTTCTCGGTAAGCCTATGGGGCAGTCTGCCGCTATTGCG CCAACTTACCGAGTTGCCGGCCATGATGACGACGGTGGTGGCCCTCGCGGCGGCCGCCGCTGTCGCCTGGTGCTCGGCAA TTTTTGTGCGCGAGCCCCACAGTCGAATGCCGGACCCGGATCTGAGCTATTGGCTCGGCGGCGTGCTCTCGCTTGTGGCA GCGCTGTACCTCTACTTTGCCGCTCTGGCCTGGGGAGAGCCGGCGCGGGTGACGCTGGTGACGTACCTGTGGCCGGTCGT CTTCGTGCTCGTCGCCAACTGGCTCGCCGGGTGCGGGGTGCAGCTGCGGGTGCTTCTCGGGATGGGGGTGGCGTTCATCG GTGTGGCGCCGCTGATCCTCGGCGACGCGCCTGCCGGGGCCGAGACGCCGCTGGTGGCCTACGTCTTTGGGGTGATCAGT GGCTGTGCCTGGGCGGCGTTCTCGGTCTATCTGACCCAGGCGGGTACGATCCCGTTCCGCGGCTACGCACGCATGTTTGC ACAGGCCGCAGTGATCGCCGTGGTGCTCGCCGTGCTGTTCGGCGAGAGCGTCGGTACGCCCCAGAGTACGGACTGGTTGG CGGCTGCGCTGATCGGGGTCGGGCCCTACGGCATCGCCTTTATGACCTGGGGGTTTGCCCTGCGTAAGGGGCCCACCGGG TTGCTGGGTGTCCTGACCTACATGGTGCCGGTGATCTCCGCCGTGGTGCTGGTCCTCACCGGTTTCACCGAGCCGGAGCT CGCCCTGCTGGTTGCGGGCCTGGCCGTGGTGGGCGGCGCGCTGCTGGCCCAGAGTGCCGAGGCTCAGTCCGAGTCCGGCG CCGCCGAGCGAGATCCGGATGCGGTCGAGGATGCCTCAGCCCGCCGGGCGATGGACCGGGCCAGCCCCGAGAATATCAGG GAGTGA
Upstream 100 bases:
>100_bases ATGATCGGATGATTACGAAGATTCGTTTGGAAGATCGCGGGATGGTCCCTATATTACGCAGCCCGTTCAGGCCCATCAAA AGGTTAGAGGAGGTTATGCG
Downstream 100 bases:
>100_bases GCCGGGGCCAGGGCGTACCAGTAAAGGAGGCCCCAGACCCCGGCCGGGTGCCAGTGGTTGGCAACCGTGATCTTGGTCCC GCCCTCGGCTTGCGGTGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MLNRALLSGLVAGIFSVSLWGSLPLLRQLTELPAMMTTVVALAAAAAVAWCSAIFVREPHSRMPDPDLSYWLGGVLSLVA ALYLYFAALAWGEPARVTLVTYLWPVVFVLVANWLAGCGVQLRVLLGMGVAFIGVAPLILGDAPAGAETPLVAYVFGVIS GCAWAAFSVYLTQAGTIPFRGYARMFAQAAVIAVVLAVLFGESVGTPQSTDWLAAALIGVGPYGIAFMTWGFALRKGPTG LLGVLTYMVPVISAVVLVLTGFTEPELALLVAGLAVVGGALLAQSAEAQSESGAAERDPDAVEDASARRAMDRASPENIR E
Sequences:
>Translated_321_residues MLNRALLSGLVAGIFSVSLWGSLPLLRQLTELPAMMTTVVALAAAAAVAWCSAIFVREPHSRMPDPDLSYWLGGVLSLVA ALYLYFAALAWGEPARVTLVTYLWPVVFVLVANWLAGCGVQLRVLLGMGVAFIGVAPLILGDAPAGAETPLVAYVFGVIS GCAWAAFSVYLTQAGTIPFRGYARMFAQAAVIAVVLAVLFGESVGTPQSTDWLAAALIGVGPYGIAFMTWGFALRKGPTG LLGVLTYMVPVISAVVLVLTGFTEPELALLVAGLAVVGGALLAQSAEAQSESGAAERDPDAVEDASARRAMDRASPENIR E >Mature_321_residues MLNRALLSGLVAGIFSVSLWGSLPLLRQLTELPAMMTTVVALAAAAAVAWCSAIFVREPHSRMPDPDLSYWLGGVLSLVA ALYLYFAALAWGEPARVTLVTYLWPVVFVLVANWLAGCGVQLRVLLGMGVAFIGVAPLILGDAPAGAETPLVAYVFGVIS GCAWAAFSVYLTQAGTIPFRGYARMFAQAAVIAVVLAVLFGESVGTPQSTDWLAAALIGVGPYGIAFMTWGFALRKGPTG LLGVLTYMVPVISAVVLVLTGFTEPELALLVAGLAVVGGALLAQSAEAQSESGAAERDPDAVEDASARRAMDRASPENIR E
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33471; Mature: 33471
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNRALLSGLVAGIFSVSLWGSLPLLRQLTELPAMMTTVVALAAAAAVAWCSAIFVREPH CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SRMPDPDLSYWLGGVLSLVAALYLYFAALAWGEPARVTLVTYLWPVVFVLVANWLAGCGV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH QLRVLLGMGVAFIGVAPLILGDAPAGAETPLVAYVFGVISGCAWAAFSVYLTQAGTIPFR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH GYARMFAQAAVIAVVLAVLFGESVGTPQSTDWLAAALIGVGPYGIAFMTWGFALRKGPTG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH LLGVLTYMVPVISAVVLVLTGFTEPELALLVAGLAVVGGALLAQSAEAQSESGAAERDPD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH AVEDASARRAMDRASPENIRE HHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLNRALLSGLVAGIFSVSLWGSLPLLRQLTELPAMMTTVVALAAAAAVAWCSAIFVREPH CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SRMPDPDLSYWLGGVLSLVAALYLYFAALAWGEPARVTLVTYLWPVVFVLVANWLAGCGV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH QLRVLLGMGVAFIGVAPLILGDAPAGAETPLVAYVFGVISGCAWAAFSVYLTQAGTIPFR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH GYARMFAQAAVIAVVLAVLFGESVGTPQSTDWLAAALIGVGPYGIAFMTWGFALRKGPTG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH LLGVLTYMVPVISAVVLVLTGFTEPELALLVAGLAVVGGALLAQSAEAQSESGAAERDPD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH AVEDASARRAMDRASPENIRE HHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA