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The map label for this gene is crtB [H]

Identifier: 121998397

GI number: 121998397

Start: 1764558

End: 1765652

Strand: Reverse

Name: crtB [H]

Synonym: Hhal_1618

Alternate gene names: 121998397

Gene position: 1765652-1764558 (Counterclockwise)

Preceding gene: 121998398

Following gene: 121998396

Centisome position: 65.92

GC content: 69.68

Gene sequence:

>1095_bases
ATGCTCGTACCTTCGCCTGATCCAAGCCTGGCACCGGAGCCATATCTGCTCCACACGGATCGCCGAGCTTGTCGGGCCCT
GCTTAGCACCGGGTCGCGGACTTTCATGGCCGCGTCCTGGCTGCTCCCGCGGGAGCGCCGTGATGCCGCCACTGCCCTCT
ACGCCTTCTGCCGCGAGGCAGACGATGCCGTGGATGAGGGGCCAGGCGATGCGGCGGCACTGGCGGCGCTGCATGAGCGC
CTGGATGCGGTCTACGCCGGTCGGCCGCAGGCCCATCCTGCGGATCGTGCCTTCGCCTGCGTGGCCCACTACTACAATGT
CCCGCAGACCCTGCCGGGGGCGTTGATCGAGGGGTTTCGCTGGGACGCCGAGGGGCGCCGTTACGAGACCATCGAAGAAC
TCTACGAGTACGCCGTGCGTGTCGCGGGCACAGTCGGGGTGATGATGTCGCTGCTCATGGATGTGCGTAGCCCCTCAGCA
CTGGCCCGGGCGTGCGACCTCGGGGTCGGTATGCAGTTGACCAACATCGCCCGCGATGTCGGCGAGGATGCACGGCGCGG
CCGGCTTTATCTGCCGCGGCAGTGGATGTACGAGGCCGGTGTCGACCCGGACGCATTCCTAGCCCGGCCGCAATTCTCGC
CGGAGCTCGGCAGGGTCATTCAGCGCCTTCTGTGTGACGCCGATCGCCACTACGAACGGGCCATGCCGGGCTTCCACGCG
CTGCCGCGGCGGGTACGCCCGGGGCTGTGTGCCGCCCGGCTCCTCTACGCTGAGATCGGCCGCGAACTCGAGCGCCGGGA
CTGCGACTCGGTCAATCAGCGGGCCGTAGTCGGCGCGCAGCGCAAGCTGCGCGTCCTCTCCCAGGTGGCCTCGACCCTGG
CCGCCGCTCCGCGGGACGACTCGGCGCCGGCCTTACCACAGGGGCAGTACCTGATCGATGCCGTCCGGCAGGCACCCGAG
GCTGTGGGTCCGCCGGGGCGCCTCGAGGGGCAGGTCGCTTGGGTGCTGGGCCTGTTCGAGCGCCTCGAGCGGATGGATGC
GGAGCGCCTGGAGCGTATGGATGCCGCCCGATCCGGGCGCCAGGTCTCCGGCTGA

Upstream 100 bases:

>100_bases
GATGTCCAGCACCTCTACCTGGTCGGCGCCGGTACCCACCCCGGTGCCGGTCTGCCCGGAGTGGTTTCTTCTGCCAAGAT
CCTCGACGAGGTAGTCCCTG

Downstream 100 bases:

>100_bases
TTCCGGCGGTTCTACTGACGGGCACGCCTTCCAGGGCTCGCCGGTTCGGCTGGGGATACGAGCCGCGGTGTGGCGAGCCG
CGCCGGGTGTTCCGGCCAGC

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MLVPSPDPSLAPEPYLLHTDRRACRALLSTGSRTFMAASWLLPRERRDAATALYAFCREADDAVDEGPGDAAALAALHER
LDAVYAGRPQAHPADRAFACVAHYYNVPQTLPGALIEGFRWDAEGRRYETIEELYEYAVRVAGTVGVMMSLLMDVRSPSA
LARACDLGVGMQLTNIARDVGEDARRGRLYLPRQWMYEAGVDPDAFLARPQFSPELGRVIQRLLCDADRHYERAMPGFHA
LPRRVRPGLCAARLLYAEIGRELERRDCDSVNQRAVVGAQRKLRVLSQVASTLAAAPRDDSAPALPQGQYLIDAVRQAPE
AVGPPGRLEGQVAWVLGLFERLERMDAERLERMDAARSGRQVSG

Sequences:

>Translated_364_residues
MLVPSPDPSLAPEPYLLHTDRRACRALLSTGSRTFMAASWLLPRERRDAATALYAFCREADDAVDEGPGDAAALAALHER
LDAVYAGRPQAHPADRAFACVAHYYNVPQTLPGALIEGFRWDAEGRRYETIEELYEYAVRVAGTVGVMMSLLMDVRSPSA
LARACDLGVGMQLTNIARDVGEDARRGRLYLPRQWMYEAGVDPDAFLARPQFSPELGRVIQRLLCDADRHYERAMPGFHA
LPRRVRPGLCAARLLYAEIGRELERRDCDSVNQRAVVGAQRKLRVLSQVASTLAAAPRDDSAPALPQGQYLIDAVRQAPE
AVGPPGRLEGQVAWVLGLFERLERMDAERLERMDAARSGRQVSG
>Mature_364_residues
MLVPSPDPSLAPEPYLLHTDRRACRALLSTGSRTFMAASWLLPRERRDAATALYAFCREADDAVDEGPGDAAALAALHER
LDAVYAGRPQAHPADRAFACVAHYYNVPQTLPGALIEGFRWDAEGRRYETIEELYEYAVRVAGTVGVMMSLLMDVRSPSA
LARACDLGVGMQLTNIARDVGEDARRGRLYLPRQWMYEAGVDPDAFLARPQFSPELGRVIQRLLCDADRHYERAMPGFHA
LPRRVRPGLCAARLLYAEIGRELERRDCDSVNQRAVVGAQRKLRVLSQVASTLAAAPRDDSAPALPQGQYLIDAVRQAPE
AVGPPGRLEGQVAWVLGLFERLERMDAERLERMDAARSGRQVSG

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 40248; Mature: 40248

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1 ; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVPSPDPSLAPEPYLLHTDRRACRALLSTGSRTFMAASWLLPRERRDAATALYAFCREA
CCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DDAVDEGPGDAAALAALHERLDAVYAGRPQAHPADRAFACVAHYYNVPQTLPGALIEGFR
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHCHHHHHHCCC
WDAEGRRYETIEELYEYAVRVAGTVGVMMSLLMDVRSPSALARACDLGVGMQLTNIARDV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH
GEDARRGRLYLPRQWMYEAGVDPDAFLARPQFSPELGRVIQRLLCDADRHYERAMPGFHA
HHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
LPRRVRPGLCAARLLYAEIGRELERRDCDSVNQRAVVGAQRKLRVLSQVASTLAAAPRDD
HHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SAPALPQGQYLIDAVRQAPEAVGPPGRLEGQVAWVLGLFERLERMDAERLERMDAARSGR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QVSG
CCCC
>Mature Secondary Structure
MLVPSPDPSLAPEPYLLHTDRRACRALLSTGSRTFMAASWLLPRERRDAATALYAFCREA
CCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DDAVDEGPGDAAALAALHERLDAVYAGRPQAHPADRAFACVAHYYNVPQTLPGALIEGFR
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHCHHHHHHCCC
WDAEGRRYETIEELYEYAVRVAGTVGVMMSLLMDVRSPSALARACDLGVGMQLTNIARDV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH
GEDARRGRLYLPRQWMYEAGVDPDAFLARPQFSPELGRVIQRLLCDADRHYERAMPGFHA
HHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
LPRRVRPGLCAARLLYAEIGRELERRDCDSVNQRAVVGAQRKLRVLSQVASTLAAAPRDD
HHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SAPALPQGQYLIDAVRQAPEAVGPPGRLEGQVAWVLGLFERLERMDAERLERMDAARSGR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QVSG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2747617 [H]