| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998351
Identifier: 121998351
GI number: 121998351
Start: 1712337
End: 1712591
Strand: Reverse
Name: 121998351
Synonym: Hhal_1572
Alternate gene names: NA
Gene position: 1712591-1712337 (Counterclockwise)
Preceding gene: 121998354
Following gene: 121998350
Centisome position: 63.94
GC content: 52.55
Gene sequence:
>255_bases ATGTCGAGTATTGAGGAAGTCAAAGGGATCTTGGACGCTACGCTAAGCTTAGGTGGGCGTGCTAAGCGTTTTGATCGTGA CACCGCGCTGTTGGGAGCGTTGCCGGAGTTGGATTCCATGGCGGTTGTCTCAGTGCTTACGGCCTGCGAGGAGCGCTTTG GTTTCATCATTGAGGATGACGAGGTCAGTGGTGAGACCTTCGCCACTTTAGGTAGCTTGGCAGACTTTGTTGATGGGAAG ATCAACGAACTCTAG
Upstream 100 bases:
>100_bases TCAAGCCCGAGCAGGGTGCTTGAGGATGCTACGCTTGGCTTAAAGTGTCCCTGAACAGCTTGGGGTTTGCCGGAACGAAT TGATGGAGAGTGGAGTTCGC
Downstream 100 bases:
>100_bases TGCGGCAATGCACCCTAGGTTTCGGGCGGGTCGCCAGGGCTCCCTCTTCGAGGTTTTGTTTCTGCCTCAAGATCGCCAGC CTCGCGGGGTTGTTCTCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 84; Mature: 83
Protein sequence:
>84_residues MSSIEEVKGILDATLSLGGRAKRFDRDTALLGALPELDSMAVVSVLTACEERFGFIIEDDEVSGETFATLGSLADFVDGK INEL
Sequences:
>Translated_84_residues MSSIEEVKGILDATLSLGGRAKRFDRDTALLGALPELDSMAVVSVLTACEERFGFIIEDDEVSGETFATLGSLADFVDGK INEL >Mature_83_residues SSIEEVKGILDATLSLGGRAKRFDRDTALLGALPELDSMAVVSVLTACEERFGFIIEDDEVSGETFATLGSLADFVDGKI NEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8968; Mature: 8837
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIEEVKGILDATLSLGGRAKRFDRDTALLGALPELDSMAVVSVLTACEERFGFIIEDD CCHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEECCC EVSGETFATLGSLADFVDGKINEL CCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SSIEEVKGILDATLSLGGRAKRFDRDTALLGALPELDSMAVVSVLTACEERFGFIIEDD CHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEECCC EVSGETFATLGSLADFVDGKINEL CCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA