| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998334
Identifier: 121998334
GI number: 121998334
Start: 1690348
End: 1691439
Strand: Reverse
Name: 121998334
Synonym: Hhal_1555
Alternate gene names: NA
Gene position: 1691439-1690348 (Counterclockwise)
Preceding gene: 121998335
Following gene: 121998333
Centisome position: 63.15
GC content: 64.93
Gene sequence:
>1092_bases ATGGATTTCGCGGGACGGACTTCGTTGTGGGCCTGGGGGCCCTTGGCCGTGGTGTTGGGTCTGGCAGCAGGGTTGCCTGC GCTGCTACCGCCGGATCGCTGGTTCTGGTTCGATGAGATGTTCCAGGCGACCTACGCCTCTCAGTCCATGCTGGATGCCA TCCTGGCAACGCTCCGCTTTGATCTGCACCCGCCCCTGCACTCCATGCAGATGGTGGTCTGGGGTTGGATCCACGACTCC GATACTTGGTTGCGCCTGAACTCCGTTTTCTGGGGCGTGCTGACGGTCGCGCTGGTCTACTTCTGTGGACGCCGGCGCAT CGGTGAGCGGGAGGCATTGGTCGCTGCGCTGTTGCTCGCAGTCCTGCCCGCGGCCGTTGCCGCTGGTCAGACGCTGCGGA TGTATCCCATGTTGGCTGCGCTGGCGGTGCTGACCTGGCACTTCAGCACGGCGTGGCTGAGCGAAGCGGCCAGTCGCAAG GCGCTGTGGGGACTGGGGGCGGCTGGCGTTGCGGCAATCTACACCCACGCGACGGGGATCTTTATCCCGGTGACGGCAGG GTTCTTCGGGTTGGTCCTGATCGCCGCTTACCGGCCCGACTGGTCGCGGATCCGTGCGTGGGGGTTGACTCAGATCGTCA TCGTGGTGCTGGCGCTGCCGGCGATGGGGGATACGCTGGTTCGCAGCATCGGCCATACGGCGGTCGCGGAGCTGGCGGAC ATATGGATAGGCTTGACCGATCTGGTGATGTCCAGCATCGGTGTCCGTGAGGGTTTGATGATGGGGCTGGCCTTCGCGAT CTGGGCGTTGGCCTTGGCGGCAATCGCCCCGATGCGCTCCCGTTGGCTCGTCATTGCGTACGTGGTGTTCCCGGTCCTGC TGGTGCTTGGCCTGAGTTACGGCTTGCGTCCGGTCTGGCACCCCCGTGCCCTTTTCTACATCCTGCCGTTTATCGCTTTG GGCGCCGGGACGACCCTGGTTTGGCTCGCGGATCGGCTAGGGGGGCTCGCACCCCGTCACGGTCCGATGCTAAAAGGCGC CCTGGTCGGGGGGGGTGAGCGTGGTCCTGATGGCGGCCACGCTCTGGAATAA
Upstream 100 bases:
>100_bases TGCAGAGGCGGCGACCGATGCTGTGGTTGGAGCGGCAACTTCGCGCAGCCCGGGATCGGATCCTGCAAAAGAGGGGGCGC GAACGAAAGGAGGCGTGGTA
Downstream 100 bases:
>100_bases CGAGATCCGCTCCAAGGGTCAGGATTTTCCCAGTGCGGTGGCCTGGATGCAGGAGGATGCGGAGCCGGGGGATGTGATTA TCGCGCCGCATCATACCTAC
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MDFAGRTSLWAWGPLAVVLGLAAGLPALLPPDRWFWFDEMFQATYASQSMLDAILATLRFDLHPPLHSMQMVVWGWIHDS DTWLRLNSVFWGVLTVALVYFCGRRRIGEREALVAALLLAVLPAAVAAGQTLRMYPMLAALAVLTWHFSTAWLSEAASRK ALWGLGAAGVAAIYTHATGIFIPVTAGFFGLVLIAAYRPDWSRIRAWGLTQIVIVVLALPAMGDTLVRSIGHTAVAELAD IWIGLTDLVMSSIGVREGLMMGLAFAIWALALAAIAPMRSRWLVIAYVVFPVLLVLGLSYGLRPVWHPRALFYILPFIAL GAGTTLVWLADRLGGLAPRHGPMLKGALVGGGERGPDGGHALE
Sequences:
>Translated_363_residues MDFAGRTSLWAWGPLAVVLGLAAGLPALLPPDRWFWFDEMFQATYASQSMLDAILATLRFDLHPPLHSMQMVVWGWIHDS DTWLRLNSVFWGVLTVALVYFCGRRRIGEREALVAALLLAVLPAAVAAGQTLRMYPMLAALAVLTWHFSTAWLSEAASRK ALWGLGAAGVAAIYTHATGIFIPVTAGFFGLVLIAAYRPDWSRIRAWGLTQIVIVVLALPAMGDTLVRSIGHTAVAELAD IWIGLTDLVMSSIGVREGLMMGLAFAIWALALAAIAPMRSRWLVIAYVVFPVLLVLGLSYGLRPVWHPRALFYILPFIAL GAGTTLVWLADRLGGLAPRHGPMLKGALVGGGERGPDGGHALE >Mature_363_residues MDFAGRTSLWAWGPLAVVLGLAAGLPALLPPDRWFWFDEMFQATYASQSMLDAILATLRFDLHPPLHSMQMVVWGWIHDS DTWLRLNSVFWGVLTVALVYFCGRRRIGEREALVAALLLAVLPAAVAAGQTLRMYPMLAALAVLTWHFSTAWLSEAASRK ALWGLGAAGVAAIYTHATGIFIPVTAGFFGLVLIAAYRPDWSRIRAWGLTQIVIVVLALPAMGDTLVRSIGHTAVAELAD IWIGLTDLVMSSIGVREGLMMGLAFAIWALALAAIAPMRSRWLVIAYVVFPVLLVLGLSYGLRPVWHPRALFYILPFIAL GAGTTLVWLADRLGGLAPRHGPMLKGALVGGGERGPDGGHALE
Specific function: Unknown
COG id: COG5305
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39310; Mature: 39310
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFAGRTSLWAWGPLAVVLGLAAGLPALLPPDRWFWFDEMFQATYASQSMLDAILATLRF CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DLHPPLHSMQMVVWGWIHDSDTWLRLNSVFWGVLTVALVYFCGRRRIGEREALVAALLLA CCCCCHHHHHEEHEEEEECCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH VLPAAVAAGQTLRMYPMLAALAVLTWHFSTAWLSEAASRKALWGLGAAGVAAIYTHATGI HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCE FIPVTAGFFGLVLIAAYRPDWSRIRAWGLTQIVIVVLALPAMGDTLVRSIGHTAVAELAD EEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IWIGLTDLVMSSIGVREGLMMGLAFAIWALALAAIAPMRSRWLVIAYVVFPVLLVLGLSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLRPVWHPRALFYILPFIALGAGTTLVWLADRLGGLAPRHGPMLKGALVGGGERGPDGGH CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC ALE CCC >Mature Secondary Structure MDFAGRTSLWAWGPLAVVLGLAAGLPALLPPDRWFWFDEMFQATYASQSMLDAILATLRF CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DLHPPLHSMQMVVWGWIHDSDTWLRLNSVFWGVLTVALVYFCGRRRIGEREALVAALLLA CCCCCHHHHHEEHEEEEECCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH VLPAAVAAGQTLRMYPMLAALAVLTWHFSTAWLSEAASRKALWGLGAAGVAAIYTHATGI HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCE FIPVTAGFFGLVLIAAYRPDWSRIRAWGLTQIVIVVLALPAMGDTLVRSIGHTAVAELAD EEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IWIGLTDLVMSSIGVREGLMMGLAFAIWALALAAIAPMRSRWLVIAYVVFPVLLVLGLSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLRPVWHPRALFYILPFIALGAGTTLVWLADRLGGLAPRHGPMLKGALVGGGERGPDGGH CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC ALE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA