| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998333
Identifier: 121998333
GI number: 121998333
Start: 1689909
End: 1690370
Strand: Reverse
Name: 121998333
Synonym: Hhal_1554
Alternate gene names: NA
Gene position: 1690370-1689909 (Counterclockwise)
Preceding gene: 121998334
Following gene: 121998329
Centisome position: 63.11
GC content: 63.42
Gene sequence:
>462_bases ATGGCGGCCACGCTCTGGAATAACGAGATCCGCTCCAAGGGTCAGGATTTTCCCAGTGCGGTGGCCTGGATGCAGGAGGA TGCGGAGCCGGGGGATGTGATTATCGCGCCGCATCATACCTACTTCTGGGGCGTGAGCCGATACTGGATCGGTCCGCGCT GGGGGTCGGTCATGGAGGTTCAGGGGTGGCCGGGCAGCGAGCGTTGGGAGCAGATCTATGAGCAGCTCGGGGCGACCTGG CGCGAGCGTCTACGACTGGAAGGGAAAACCCGCTCCGTGGCCGCCAACGGCCGGGAGATCTTCATCGGCCACCGGAAGCA CAGCCGCTTCGAAGAGGCAAACCGAATCTGGATCGTGGGCGACGGCTCCGAGGAGCTGGACTGGCTGCCGGAACTGGGGT TCGAAGAGGAACGTCATCGGGATTTTCGGGACCTTTCGGTGCGGCTTTACACGCGGGACTGA
Upstream 100 bases:
>100_bases ACGACCCTGGTTTGGCTCGCGGATCGGCTAGGGGGGCTCGCACCCCGTCACGGTCCGATGCTAAAAGGCGCCCTGGTCGG GGGGGGTGAGCGTGGTCCTG
Downstream 100 bases:
>100_bases GCGCCGCATGGTCGCGGTGGGGCGATCAGCGAGGTTGCTTCGAGTCCCGTGCAGCTGGCGTTGCGAAGGAGAGGTACTTG TGCCCGAGGAAACTGGAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MAATLWNNEIRSKGQDFPSAVAWMQEDAEPGDVIIAPHHTYFWGVSRYWIGPRWGSVMEVQGWPGSERWEQIYEQLGATW RERLRLEGKTRSVAANGREIFIGHRKHSRFEEANRIWIVGDGSEELDWLPELGFEEERHRDFRDLSVRLYTRD
Sequences:
>Translated_153_residues MAATLWNNEIRSKGQDFPSAVAWMQEDAEPGDVIIAPHHTYFWGVSRYWIGPRWGSVMEVQGWPGSERWEQIYEQLGATW RERLRLEGKTRSVAANGREIFIGHRKHSRFEEANRIWIVGDGSEELDWLPELGFEEERHRDFRDLSVRLYTRD >Mature_152_residues AATLWNNEIRSKGQDFPSAVAWMQEDAEPGDVIIAPHHTYFWGVSRYWIGPRWGSVMEVQGWPGSERWEQIYEQLGATWR ERLRLEGKTRSVAANGREIFIGHRKHSRFEEANRIWIVGDGSEELDWLPELGFEEERHRDFRDLSVRLYTRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18088; Mature: 17957
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATLWNNEIRSKGQDFPSAVAWMQEDAEPGDVIIAPHHTYFWGVSRYWIGPRWGSVMEV CCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCEEECCEEEEECCCCCCEEEE QGWPGSERWEQIYEQLGATWRERLRLEGKTRSVAANGREIFIGHRKHSRFEEANRIWIVG ECCCCHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHCCEEEEEE DGSEELDWLPELGFEEERHRDFRDLSVRLYTRD CCCCHHHHCCCCCCCCHHCCCCCCEEEEEEECC >Mature Secondary Structure AATLWNNEIRSKGQDFPSAVAWMQEDAEPGDVIIAPHHTYFWGVSRYWIGPRWGSVMEV CCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCEEECCEEEEECCCCCCEEEE QGWPGSERWEQIYEQLGATWRERLRLEGKTRSVAANGREIFIGHRKHSRFEEANRIWIVG ECCCCHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHCCEEEEEE DGSEELDWLPELGFEEERHRDFRDLSVRLYTRD CCCCHHHHCCCCCCCCHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA