Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998321

Identifier: 121998321

GI number: 121998321

Start: 1673911

End: 1675044

Strand: Reverse

Name: 121998321

Synonym: Hhal_1539

Alternate gene names: NA

Gene position: 1675044-1673911 (Counterclockwise)

Preceding gene: 121998322

Following gene: 121998320

Centisome position: 62.54

GC content: 66.67

Gene sequence:

>1134_bases
TTGACGCGCTGGCCGCTTAATCCTGCTCACGCGCTCGGACAAGGCCTGGCCTGGCCTGAGACCCTGGCCGGCTTTCCGGA
GTCGCTGTGGACGGGGATCCTGGCCGTGGGGCGTGAGAACCTCTTGCTCGGGGCGTTGTGGCACCGTGCGGTGAGCTGTG
GGGTCGAAGGGCAGTTGCCGGAGTGGGTGGCCGGGCATCTGTGGGGTGCGGCAGCAACTGCCGAGACCAACGCCGCGGCG
CTTCGGTGGGAGTTGCAACAGCTCGACCGCGGGGTGTTGCGGCGGTTCACTGCTCCGGTCGCCTTGAAGGGGGGCGCCTA
CCTGCTGGCGGGATTGCCGAATGCGGCCGGGAGGATCGTGGCGGATATCGATCTGTTGGCACAAAAGGCGGAGGTCGAGC
GAGTCGAGTCGGCCCTGTTCTATGAAGGGTGGGCGGGGACCCACCACGACGCCTACGATCAGCGTTACTACCGGCAGTGG
ATGCACGAGCTCCCGCCTCTGCAACACCGCAAACGCGGGACCACGCTGGATCTGCACCATAACATCTTGCCCGAGACCTT
CGCCGTGGTCGTCGATCCGGCCCCCATCTTTGAGCACGCCGCCCCCGCTCCGGGGCTGCACTGGCTGCGGCTGCCGGCGC
CCCGGCACTTGGTACTCCACGCCATCGTCCACCTGTTCTCGGAAACCGATTGGGACCGCGGATTGCGGGATCTTTACGAC
ATCCATAGCCTGCTTGAGCACTTCCATCAGCAGCACGGCGACCGGTTCTGGGAGGCGCTGCTCGACGAGGCCGAGGCCAT
GCGGCTGCTCTGGCTGGTGGAGCCGGCCGTCTGGTGCTGCCGGCGGCGCTTCGGTACCCCAGTCCCGCAGGCGGCAGTGG
AGCGCCTGAGTCACCACACCCCCGGGTTTTTGGGCAAGCGTATTGTGCGGCCTGCGTTCGAGCACGCGCTGAACGGCCAT
CTCTCCACGACGCCGAGAGCCGATGCCCTGGCGCGAGGCCTGATGCTTGTCCGTGGCCACTGGCTGAAGATGCCGCCTTG
GCTACTGGTTCGTCACCTGTTCTACAAGGCCTTCCGCGCACCCCGGGATCTGGATGCCGAGGCGGCGCAGATGGATCCAC
AACAGCACGGATGA

Upstream 100 bases:

>100_bases
GCCCTCGGAAGGCGTGCCTTCCACAGAACGGTGGACCTTGTGGAGCAGGCACCGGGCTATGACTTCGGTTACAGCCGGCT
GGAGGAGGCCGTCGAGAGCT

Downstream 100 bases:

>100_bases
TGCCCCTATGGCCGATGATGCCTACACCCCGTCGCAAGCAGCGCCTGATTCGCAAGACGTGTTCGAGCGTGCCGCCCGCC
GCCACGCGGTGATCCTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLPEWVAGHLWGAAATAETNAAA
LRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIVADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQW
MHELPPLQHRKRGTTLDLHHNILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD
IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHTPGFLGKRIVRPAFEHALNGH
LSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRAPRDLDAEAAQMDPQQHG

Sequences:

>Translated_377_residues
MTRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLPEWVAGHLWGAAATAETNAAA
LRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIVADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQW
MHELPPLQHRKRGTTLDLHHNILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD
IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHTPGFLGKRIVRPAFEHALNGH
LSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRAPRDLDAEAAQMDPQQHG
>Mature_376_residues
TRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLPEWVAGHLWGAAATAETNAAAL
RWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIVADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQWM
HELPPLQHRKRGTTLDLHHNILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYDI
HSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHTPGFLGKRIVRPAFEHALNGHL
STTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRAPRDLDAEAAQMDPQQHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42607; Mature: 42476

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLP
CCCCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCH
EWVAGHLWGAAATAETNAAALRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCHHH
ADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQWMHELPPLQHRKRGTTLDLHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEHHH
NILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD
CCCCHHHEEEECCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
PGFLGKRIVRPAFEHALNGHLSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRA
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
PRDLDAEAAQMDPQQHG
CCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
TRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLP
CCCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCH
EWVAGHLWGAAATAETNAAALRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCHHH
ADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQWMHELPPLQHRKRGTTLDLHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEHHH
NILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD
CCCCHHHEEEECCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
PGFLGKRIVRPAFEHALNGHLSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRA
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
PRDLDAEAAQMDPQQHG
CCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA