| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998321
Identifier: 121998321
GI number: 121998321
Start: 1673911
End: 1675044
Strand: Reverse
Name: 121998321
Synonym: Hhal_1539
Alternate gene names: NA
Gene position: 1675044-1673911 (Counterclockwise)
Preceding gene: 121998322
Following gene: 121998320
Centisome position: 62.54
GC content: 66.67
Gene sequence:
>1134_bases TTGACGCGCTGGCCGCTTAATCCTGCTCACGCGCTCGGACAAGGCCTGGCCTGGCCTGAGACCCTGGCCGGCTTTCCGGA GTCGCTGTGGACGGGGATCCTGGCCGTGGGGCGTGAGAACCTCTTGCTCGGGGCGTTGTGGCACCGTGCGGTGAGCTGTG GGGTCGAAGGGCAGTTGCCGGAGTGGGTGGCCGGGCATCTGTGGGGTGCGGCAGCAACTGCCGAGACCAACGCCGCGGCG CTTCGGTGGGAGTTGCAACAGCTCGACCGCGGGGTGTTGCGGCGGTTCACTGCTCCGGTCGCCTTGAAGGGGGGCGCCTA CCTGCTGGCGGGATTGCCGAATGCGGCCGGGAGGATCGTGGCGGATATCGATCTGTTGGCACAAAAGGCGGAGGTCGAGC GAGTCGAGTCGGCCCTGTTCTATGAAGGGTGGGCGGGGACCCACCACGACGCCTACGATCAGCGTTACTACCGGCAGTGG ATGCACGAGCTCCCGCCTCTGCAACACCGCAAACGCGGGACCACGCTGGATCTGCACCATAACATCTTGCCCGAGACCTT CGCCGTGGTCGTCGATCCGGCCCCCATCTTTGAGCACGCCGCCCCCGCTCCGGGGCTGCACTGGCTGCGGCTGCCGGCGC CCCGGCACTTGGTACTCCACGCCATCGTCCACCTGTTCTCGGAAACCGATTGGGACCGCGGATTGCGGGATCTTTACGAC ATCCATAGCCTGCTTGAGCACTTCCATCAGCAGCACGGCGACCGGTTCTGGGAGGCGCTGCTCGACGAGGCCGAGGCCAT GCGGCTGCTCTGGCTGGTGGAGCCGGCCGTCTGGTGCTGCCGGCGGCGCTTCGGTACCCCAGTCCCGCAGGCGGCAGTGG AGCGCCTGAGTCACCACACCCCCGGGTTTTTGGGCAAGCGTATTGTGCGGCCTGCGTTCGAGCACGCGCTGAACGGCCAT CTCTCCACGACGCCGAGAGCCGATGCCCTGGCGCGAGGCCTGATGCTTGTCCGTGGCCACTGGCTGAAGATGCCGCCTTG GCTACTGGTTCGTCACCTGTTCTACAAGGCCTTCCGCGCACCCCGGGATCTGGATGCCGAGGCGGCGCAGATGGATCCAC AACAGCACGGATGA
Upstream 100 bases:
>100_bases GCCCTCGGAAGGCGTGCCTTCCACAGAACGGTGGACCTTGTGGAGCAGGCACCGGGCTATGACTTCGGTTACAGCCGGCT GGAGGAGGCCGTCGAGAGCT
Downstream 100 bases:
>100_bases TGCCCCTATGGCCGATGATGCCTACACCCCGTCGCAAGCAGCGCCTGATTCGCAAGACGTGTTCGAGCGTGCCGCCCGCC GCCACGCGGTGATCCTTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLPEWVAGHLWGAAATAETNAAA LRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIVADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQW MHELPPLQHRKRGTTLDLHHNILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHTPGFLGKRIVRPAFEHALNGH LSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRAPRDLDAEAAQMDPQQHG
Sequences:
>Translated_377_residues MTRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLPEWVAGHLWGAAATAETNAAA LRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIVADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQW MHELPPLQHRKRGTTLDLHHNILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHTPGFLGKRIVRPAFEHALNGH LSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRAPRDLDAEAAQMDPQQHG >Mature_376_residues TRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLPEWVAGHLWGAAATAETNAAAL RWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIVADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQWM HELPPLQHRKRGTTLDLHHNILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYDI HSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHTPGFLGKRIVRPAFEHALNGHL STTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRAPRDLDAEAAQMDPQQHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42607; Mature: 42476
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLP CCCCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCH EWVAGHLWGAAATAETNAAALRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCHHH ADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQWMHELPPLQHRKRGTTLDLHH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEHHH NILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD CCCCHHHEEEECCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC PGFLGKRIVRPAFEHALNGHLSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRA CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC PRDLDAEAAQMDPQQHG CCCCCCHHHHCCCCCCC >Mature Secondary Structure TRWPLNPAHALGQGLAWPETLAGFPESLWTGILAVGRENLLLGALWHRAVSCGVEGQLP CCCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCH EWVAGHLWGAAATAETNAAALRWELQQLDRGVLRRFTAPVALKGGAYLLAGLPNAAGRIV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCHHH ADIDLLAQKAEVERVESALFYEGWAGTHHDAYDQRYYRQWMHELPPLQHRKRGTTLDLHH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCEEEHHH NILPETFAVVVDPAPIFEHAAPAPGLHWLRLPAPRHLVLHAIVHLFSETDWDRGLRDLYD CCCCHHHEEEECCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH IHSLLEHFHQQHGDRFWEALLDEAEAMRLLWLVEPAVWCCRRRFGTPVPQAAVERLSHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC PGFLGKRIVRPAFEHALNGHLSTTPRADALARGLMLVRGHWLKMPPWLLVRHLFYKAFRA CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC PRDLDAEAAQMDPQQHG CCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA