| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998310
Identifier: 121998310
GI number: 121998310
Start: 1657636
End: 1658457
Strand: Reverse
Name: 121998310
Synonym: Hhal_1528
Alternate gene names: NA
Gene position: 1658457-1657636 (Counterclockwise)
Preceding gene: 121998312
Following gene: 121998309
Centisome position: 61.92
GC content: 61.56
Gene sequence:
>822_bases ATGTTACGGGCAAGTCCTTTTTCGGGGGTCTTGGGGGGCGTGATACTCCTGACCGCGGGGTTGGTGTCGCTGGTGGCGGC GAATGAGGAGCCAGCCGATGGCGAGGAGCTGGCCCAGTGGGTCTATGACCGCCCCGAAGGGGATGATGCCGTGCAACAGG GGCGTATGGTGCTCGATGGCCCCGGTCGCTCCGAGCGGGAGCGTTCGTTCTACGAGTACCGTCTACAGATTGACGATGAG GAGGTCTGGAACCTGGTCCGGTTCACGGCCCCATCGGATGTTGCCGATACGGCGATGCTCACACGGGACTATCCAGACGG CAGCACAGATCAATGGCTTTACCTGCCGGCACTGGACCGGGTTCGAAGGGTGGCCTCGGAGCGGATGGGCGGTCGCTTCG TGGACAGCGACTTCTTCTTTGAGGATTTGCGCGATCGTAAAGTCCGGCAGGACGAACACGAATACGTGGGTCGGGATGAG TTGGAGGGCCTTCCGGTTTTCCGCCTGGAGAGTCGCCCTGTCGAGGGCGACAACTCCGTGTATACCCTGCGCGATCAGTG GGTTCATGAAGAGTCGCTGGTTCCCCTGCGAATCGACTACTACCAGGGCGATGACGAGCCGGCGAAGCGATTAACGGTGC AGGCCTTGGAGCAGCACCAGGGCTACTGGACGGTTGTCGAGAGCACCATGGAAGACCTGGATAGTGGTCACCAAACTCGC TTCCTTGTCGAGCAGGTGGTCTATGACCAGGGGTTGCCGCAAGATCTCTTCTCCCGCGCGGCGTTGTCGGATCCGGGGGG CGAACGTGCCTACCGCCCTTGA
Upstream 100 bases:
>100_bases TAGGGGAGCTTGCGCAATTCCGATCAGTACAGGAGAGTAGGACGGATGTGGTTCGTGTGTCTCTGAATGGGGAGAGTCGT CTATGTCGGCCGTGGGCAGG
Downstream 100 bases:
>100_bases CCGGCCCATTCCGCGGTGTCGGACGCTGCTGGTGGTGCTAGGGCTCGGGTCGGCGTCCATCGGGGTTAATGGGGTGGCCT TGGCCTCAATAGGTGATCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MLRASPFSGVLGGVILLTAGLVSLVAANEEPADGEELAQWVYDRPEGDDAVQQGRMVLDGPGRSERERSFYEYRLQIDDE EVWNLVRFTAPSDVADTAMLTRDYPDGSTDQWLYLPALDRVRRVASERMGGRFVDSDFFFEDLRDRKVRQDEHEYVGRDE LEGLPVFRLESRPVEGDNSVYTLRDQWVHEESLVPLRIDYYQGDDEPAKRLTVQALEQHQGYWTVVESTMEDLDSGHQTR FLVEQVVYDQGLPQDLFSRAALSDPGGERAYRP
Sequences:
>Translated_273_residues MLRASPFSGVLGGVILLTAGLVSLVAANEEPADGEELAQWVYDRPEGDDAVQQGRMVLDGPGRSERERSFYEYRLQIDDE EVWNLVRFTAPSDVADTAMLTRDYPDGSTDQWLYLPALDRVRRVASERMGGRFVDSDFFFEDLRDRKVRQDEHEYVGRDE LEGLPVFRLESRPVEGDNSVYTLRDQWVHEESLVPLRIDYYQGDDEPAKRLTVQALEQHQGYWTVVESTMEDLDSGHQTR FLVEQVVYDQGLPQDLFSRAALSDPGGERAYRP >Mature_273_residues MLRASPFSGVLGGVILLTAGLVSLVAANEEPADGEELAQWVYDRPEGDDAVQQGRMVLDGPGRSERERSFYEYRLQIDDE EVWNLVRFTAPSDVADTAMLTRDYPDGSTDQWLYLPALDRVRRVASERMGGRFVDSDFFFEDLRDRKVRQDEHEYVGRDE LEGLPVFRLESRPVEGDNSVYTLRDQWVHEESLVPLRIDYYQGDDEPAKRLTVQALEQHQGYWTVVESTMEDLDSGHQTR FLVEQVVYDQGLPQDLFSRAALSDPGGERAYRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31272; Mature: 31272
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRASPFSGVLGGVILLTAGLVSLVAANEEPADGEELAQWVYDRPEGDDAVQQGRMVLDG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHCCCEEEEC PGRSERERSFYEYRLQIDDEEVWNLVRFTAPSDVADTAMLTRDYPDGSTDQWLYLPALDR CCCCHHHHHHHHEEEEECHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEECHHHHH VRRVASERMGGRFVDSDFFFEDLRDRKVRQDEHEYVGRDELEGLPVFRLESRPVEGDNSV HHHHHHHHHCCEECCHHHHHHHHHHHHHCCHHHHHCCCHHHCCCCEEEECCCCCCCCCCE YTLRDQWVHEESLVPLRIDYYQGDDEPAKRLTVQALEQHQGYWTVVESTMEDLDSGHQTR EEEHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH FLVEQVVYDQGLPQDLFSRAALSDPGGERAYRP HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLRASPFSGVLGGVILLTAGLVSLVAANEEPADGEELAQWVYDRPEGDDAVQQGRMVLDG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHCCCEEEEC PGRSERERSFYEYRLQIDDEEVWNLVRFTAPSDVADTAMLTRDYPDGSTDQWLYLPALDR CCCCHHHHHHHHEEEEECHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEECHHHHH VRRVASERMGGRFVDSDFFFEDLRDRKVRQDEHEYVGRDELEGLPVFRLESRPVEGDNSV HHHHHHHHHCCEECCHHHHHHHHHHHHHCCHHHHHCCCHHHCCCCEEEECCCCCCCCCCE YTLRDQWVHEESLVPLRIDYYQGDDEPAKRLTVQALEQHQGYWTVVESTMEDLDSGHQTR EEEHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH FLVEQVVYDQGLPQDLFSRAALSDPGGERAYRP HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA