| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998309
Identifier: 121998309
GI number: 121998309
Start: 1656120
End: 1657604
Strand: Reverse
Name: 121998309
Synonym: Hhal_1527
Alternate gene names: NA
Gene position: 1657604-1656120 (Counterclockwise)
Preceding gene: 121998310
Following gene: 121998308
Centisome position: 61.89
GC content: 66.26
Gene sequence:
>1485_bases GTGGTGCTAGGGCTCGGGTCGGCGTCCATCGGGGTTAATGGGGTGGCCTTGGCCTCAATAGGTGATCGTGGCGATGCGGC CGGTGACTCGGTGGAGCCGGTCCGGGGGGAGTTTGAGGCTTTGGAGCCGTCGCGGCGGCTCGCGGAAAACGGGGCCGAGG GCGACGGCGGTATACGCATCGGCGATCCGTCGCCGGAGGCCGTCGACGAGGACAAGCCACAACCGGAGGCATGGCTCCCG GAGGACTGGGCGTTCGGAGTCGAAAGTGTGCGTCTGGACGCGGGTTGGCTGCCGCGCAGTGCCTCTTACGCCGACCTGGT CTACCACGGGCACCTGCTAGGACGTGCGGACTGGCAACCCCGGGGCCCCTGGAGCGCTCGCGTGGAGAGCCGCGTGGACG GTCATTACCAGCGCGGGGGCCCACGTGTCGAGGAGATCGATGTCGACTACGGGGAGGTGTACCTCCGCTACCGGGGTCGC GGATGGCGTCTGACCGCTGGTGCGCAACAGGTGGTCTGGGGCCGGATCGATGAGGTCTCGCCGACCGACCGACTGAGCGT CGAGGACCTGTCACGCTTTGTCCTGGACGACCTCAGTGAGCGGCGTCGCGCCGCTCCCGCGGTTCGTGGGCAGCTCTTCA CCAACGGTTGGGAGTTCGACGCCGTGGTGGTGCCGTGGTTCCGGGAGGCGGAAATGCCGGATCGCGATAGCGTCTGGCAT CCGGTTGATCGCCAGCGTGGGCGTTTTCTGGGCCTGCCGTCGGAGCCCCAATTCCAGGATCTGGTGCGAGACGGGCGGTT TGTCGAAGAGACCGACGGCGAGGGCGGCGCCGGGCTTCGGGTCAGCCGAGGCGGACGTGGCTGGGACGCTGCTGCGACGT TCAAGCGTTTCCGGCATTCCGCGCCGTACTACGAGTTGAGCGATGAGGCACGCGGAGCCCTCGATGATCCGGAGGAGGCC GTGCAGGCCGGCGATTACACCTTTCGTGCGGTCCATCCGCGCAGTTATCTGGTCGGCGTGGACGGTGCAATCGACGCTGG CGGAGTCACCTACCGCGCCGAAGCGGTATGGCTCAGCGACGTGCCGGGGACCCGGCAGGAAGATTTCGTGCGCGAGGATT TCGAGGCCTTCAATTGGGGTGTGGGGGCCGAGGTGTTTCCAGGGGACGGGGATTTGCGAGTGAACGTGCAGCTGGTTGGC AGCCACTACCTTGATGCGCCGTCCCTACTGGAACGTGCCGATGAAGTCACCCTCAATGGCGAGATCGAGGGGCGGCCCTG GCAGCGGCGTCTCCGGGCGAGGCTTCGTTATGCGATCGGGCTCGATGAGCGGGACATCTACCTGAATCCGGAGGTGGCCT GGGTGGACTGGGAACCCCATGAACTCTACGTGTCGGCGCACTATTTCGAAGGTGCGGAAGAGACGGCCGGCGGGTTCCAC CAGGATAACGACGTCATCATGACAGGCTGGAGGGGACGGTTTTGA
Upstream 100 bases:
>100_bases TTGCCGCAAGATCTCTTCTCCCGCGCGGCGTTGTCGGATCCGGGGGGCGAACGTGCCTACCGCCCTTGACCGGCCCATTC CGCGGTGTCGGACGCTGCTG
Downstream 100 bases:
>100_bases GGCGTATGACTTTGCCGCGGTGGTTGGCGGCGACCTTGTTTGCGTTGCTGCTGCTGGCGCCAGGCCCGCTCGTGCTCAAC CTGACCTTCGACAATGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MVLGLGSASIGVNGVALASIGDRGDAAGDSVEPVRGEFEALEPSRRLAENGAEGDGGIRIGDPSPEAVDEDKPQPEAWLP EDWAFGVESVRLDAGWLPRSASYADLVYHGHLLGRADWQPRGPWSARVESRVDGHYQRGGPRVEEIDVDYGEVYLRYRGR GWRLTAGAQQVVWGRIDEVSPTDRLSVEDLSRFVLDDLSERRRAAPAVRGQLFTNGWEFDAVVVPWFREAEMPDRDSVWH PVDRQRGRFLGLPSEPQFQDLVRDGRFVEETDGEGGAGLRVSRGGRGWDAAATFKRFRHSAPYYELSDEARGALDDPEEA VQAGDYTFRAVHPRSYLVGVDGAIDAGGVTYRAEAVWLSDVPGTRQEDFVREDFEAFNWGVGAEVFPGDGDLRVNVQLVG SHYLDAPSLLERADEVTLNGEIEGRPWQRRLRARLRYAIGLDERDIYLNPEVAWVDWEPHELYVSAHYFEGAEETAGGFH QDNDVIMTGWRGRF
Sequences:
>Translated_494_residues MVLGLGSASIGVNGVALASIGDRGDAAGDSVEPVRGEFEALEPSRRLAENGAEGDGGIRIGDPSPEAVDEDKPQPEAWLP EDWAFGVESVRLDAGWLPRSASYADLVYHGHLLGRADWQPRGPWSARVESRVDGHYQRGGPRVEEIDVDYGEVYLRYRGR GWRLTAGAQQVVWGRIDEVSPTDRLSVEDLSRFVLDDLSERRRAAPAVRGQLFTNGWEFDAVVVPWFREAEMPDRDSVWH PVDRQRGRFLGLPSEPQFQDLVRDGRFVEETDGEGGAGLRVSRGGRGWDAAATFKRFRHSAPYYELSDEARGALDDPEEA VQAGDYTFRAVHPRSYLVGVDGAIDAGGVTYRAEAVWLSDVPGTRQEDFVREDFEAFNWGVGAEVFPGDGDLRVNVQLVG SHYLDAPSLLERADEVTLNGEIEGRPWQRRLRARLRYAIGLDERDIYLNPEVAWVDWEPHELYVSAHYFEGAEETAGGFH QDNDVIMTGWRGRF >Mature_494_residues MVLGLGSASIGVNGVALASIGDRGDAAGDSVEPVRGEFEALEPSRRLAENGAEGDGGIRIGDPSPEAVDEDKPQPEAWLP EDWAFGVESVRLDAGWLPRSASYADLVYHGHLLGRADWQPRGPWSARVESRVDGHYQRGGPRVEEIDVDYGEVYLRYRGR GWRLTAGAQQVVWGRIDEVSPTDRLSVEDLSRFVLDDLSERRRAAPAVRGQLFTNGWEFDAVVVPWFREAEMPDRDSVWH PVDRQRGRFLGLPSEPQFQDLVRDGRFVEETDGEGGAGLRVSRGGRGWDAAATFKRFRHSAPYYELSDEARGALDDPEEA VQAGDYTFRAVHPRSYLVGVDGAIDAGGVTYRAEAVWLSDVPGTRQEDFVREDFEAFNWGVGAEVFPGDGDLRVNVQLVG SHYLDAPSLLERADEVTLNGEIEGRPWQRRLRARLRYAIGLDERDIYLNPEVAWVDWEPHELYVSAHYFEGAEETAGGFH QDNDVIMTGWRGRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55139; Mature: 55139
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLGLGSASIGVNGVALASIGDRGDAAGDSVEPVRGEFEALEPSRRLAENGAEGDGGIRI CEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCEEC GDPSPEAVDEDKPQPEAWLPEDWAFGVESVRLDAGWLPRSASYADLVYHGHLLGRADWQP CCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCCHHEEEECEEEECCCCCC RGPWSARVESRVDGHYQRGGPRVEEIDVDYGEVYLRYRGRGWRLTAGAQQVVWGRIDEVS CCCHHHHHHHHCCCCHHCCCCCEEEEECCCCEEEEEECCCCEEEECCCHHHHCCCCCCCC PTDRLSVEDLSRFVLDDLSERRRAAPAVRGQLFTNGWEFDAVVVPWFREAEMPDRDSVWH CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCEEECCCEEEEEEEECCCCCCCCCCCCCCCC PVDRQRGRFLGLPSEPQFQDLVRDGRFVEETDGEGGAGLRVSRGGRGWDAAATFKRFRHS CCHHCCCCEECCCCCCHHHHHHHCCCEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCC APYYELSDEARGALDDPEEAVQAGDYTFRAVHPRSYLVGVDGAIDAGGVTYRAEAVWLSD CCCEEECHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEC VPGTRQEDFVREDFEAFNWGVGAEVFPGDGDLRVNVQLVGSHYLDAPSLLERADEVTLNG CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEECCCCCCCHHHHHHCCCEEECC EIEGRPWQRRLRARLRYAIGLDERDIYLNPEVAWVDWEPHELYVSAHYFEGAEETAGGFH EECCCHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCCEEEEEEEEECCCHHHCCCCC QDNDVIMTGWRGRF CCCCEEEECCCCCC >Mature Secondary Structure MVLGLGSASIGVNGVALASIGDRGDAAGDSVEPVRGEFEALEPSRRLAENGAEGDGGIRI CEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCEEC GDPSPEAVDEDKPQPEAWLPEDWAFGVESVRLDAGWLPRSASYADLVYHGHLLGRADWQP CCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCCHHEEEECEEEECCCCCC RGPWSARVESRVDGHYQRGGPRVEEIDVDYGEVYLRYRGRGWRLTAGAQQVVWGRIDEVS CCCHHHHHHHHCCCCHHCCCCCEEEEECCCCEEEEEECCCCEEEECCCHHHHCCCCCCCC PTDRLSVEDLSRFVLDDLSERRRAAPAVRGQLFTNGWEFDAVVVPWFREAEMPDRDSVWH CCCCCCHHHHHHHHHHHHHHHHHCCHHHHCEEECCCEEEEEEEECCCCCCCCCCCCCCCC PVDRQRGRFLGLPSEPQFQDLVRDGRFVEETDGEGGAGLRVSRGGRGWDAAATFKRFRHS CCHHCCCCEECCCCCCHHHHHHHCCCEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCC APYYELSDEARGALDDPEEAVQAGDYTFRAVHPRSYLVGVDGAIDAGGVTYRAEAVWLSD CCCEEECHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEC VPGTRQEDFVREDFEAFNWGVGAEVFPGDGDLRVNVQLVGSHYLDAPSLLERADEVTLNG CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEECCCCCCCHHHHHHCCCEEECC EIEGRPWQRRLRARLRYAIGLDERDIYLNPEVAWVDWEPHELYVSAHYFEGAEETAGGFH EECCCHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCCEEEEEEEEECCCHHHCCCCC QDNDVIMTGWRGRF CCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA