| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998296
Identifier: 121998296
GI number: 121998296
Start: 1640204
End: 1641796
Strand: Reverse
Name: 121998296
Synonym: Hhal_1514
Alternate gene names: NA
Gene position: 1641796-1640204 (Counterclockwise)
Preceding gene: 121998297
Following gene: 121998295
Centisome position: 61.3
GC content: 65.66
Gene sequence:
>1593_bases GTGAGGCAGCTGATGGCCAGTAACCCGGATGCGATTGTCGGCGGTGGGCTCGGGGATCGAGCGCCGTGGTACCTGCACGG GGCGGCATTGGCACTGCTCGGCGTGGTGCTGGCGATCGCCTTCCTGCCAACCTATCAGGCTATTGTGGGTATTTGGTCAC GCTCAGAGACCTTCGCCCACGGTTTCCTGATCGTGCCCATCGTCCTCTTCCTGGTTTATCGGCTGCGTCACCCCCTGGCG GATCAACAGCCCAGAGTGCAACCACTGGCCCTGGTGCCGGTCGCCGGACTGGTCCTGCTCTGGGTGCTCGGCGCGTTGGT GGACGTCGACTCCGTGCGCCACTTCGCGGCGGTGCTCCTGATCCCGGCTGTCGTCTGGCTGAGCCTGGGCAACGCCGTCG CCTGGACGCTGCTCTTCCCGCTGGCCTACCTGATCTCTGCCGTCCCATTCGGTGAGTTCCTGGTCCCGCCGCTGATGGAC TGGACTGCCGACTTCACGGTATGGGCAGTGCAGCAAACCGGCGTGCCGGTCTATCGCGAAGGACTGAACTTCGAGTTGCC GACCGGCCGCTGGTCCGTGGTCGAGGCGTGCAGTGGCGTGCGTTACCTCATCGCTACCGTCGCCCTGGGCACGCTGTACG CCTACCTGGTTTACCGAAGCTGGATGCGCCGGCTGGTTTTCGTGGCCTTCTCGTTCCTGGTGCCGATCCTCGCCAACGGT CTGCGCGCCTATGCGATCGTGATGATCGGACATCTCAGTGGCATGGAGTTGGCCGCGGGGGTCGATCATCTGATCTATGG CTGGGTGTTCTTCGGTGCGGTGATCGCGCTGATGTTCTGGATCGGGACCTACTGGCGCGAGGATCGGCCGATCTCCGAGG GGGCAGCGCCCGGTCCAGGCGGCGGTGGCATGGCGGAGCGGCTTAGCGACAGTACAGGGCTTGGATCGCGTTCGGTTGCT GCGGTTGCCGGGGTGGCGTTGACGGGGGGAGTACTGGTCGCTTCCGGGCCGCTCTACGCCGGATGGATGAATCAGCGGGA TCTCGGCCCTGTTGCCGGGTTGGAGGAGGCGGAGCTGCCCCTCAATGACTGGGAGGCGATCGAGGCCGATCCCTGGGAGC CGGGGTATCGCAACGCGCGCGCGGCCTTCCACCGGCACTATGTCGATGGGCAAGGGGTTCCGGTGGGGGTCTACGTGGGC TACTACCGGGAGCAATTCCGGCACGGGAATATGATCACTTGGGATAATACCATGGCCGGCCGGGATCGGGACGCCTGGCG GCAACGCTCGGCCGGGCGGGCGGAGATCGATGATTGGACCCGCCCGGCACGATTCGAGCTCACCGGGCCGAATCGACAGA TCCTGGCCTGGCGTTGGTACTGGGTGACGGACCGGCTGACCACCAGCCCCCACGAAGTGAAGGCGCGGGAGTCGCTGTCC CGCTTGCTCGGGGGGCGCGACGATGCAGCGCTGGTGGTGCTCTATGCGCTTTATCCCGATGATCCAGAGGAGGTTGAGCC GGCCCTGCGTCGTTTTGCGGAGGCTGCGCTGCCCGAGTTGTTGGGGACCCTGGAGGAGGTTCGGGGACGTTGA
Upstream 100 bases:
>100_bases GTCGTGCAGGACTACAGTTGGGCCCGGCATCTTGGCCGGCTCGACCGGCTGCTCGCTGGCACGACCGAACGGATTGATGA CGATGAGGGACACGCGTTGA
Downstream 100 bases:
>100_bases CGATCGACCATGATCGCCGGCGCCCCCGGGATGGGCAGGGCTCGCGCCCGCTGATTGCCCATATCCTCTATCGTCTGGAT GTCGGGGGGCTGGAGAACAT
Product: eight transmembrane protein EpsH
Products: NA
Alternate protein names: Transmembrane Exosortase; ABC Transporter ; Methanolan Biosynthesis EpsI Protein
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MRQLMASNPDAIVGGGLGDRAPWYLHGAALALLGVVLAIAFLPTYQAIVGIWSRSETFAHGFLIVPIVLFLVYRLRHPLA DQQPRVQPLALVPVAGLVLLWVLGALVDVDSVRHFAAVLLIPAVVWLSLGNAVAWTLLFPLAYLISAVPFGEFLVPPLMD WTADFTVWAVQQTGVPVYREGLNFELPTGRWSVVEACSGVRYLIATVALGTLYAYLVYRSWMRRLVFVAFSFLVPILANG LRAYAIVMIGHLSGMELAAGVDHLIYGWVFFGAVIALMFWIGTYWREDRPISEGAAPGPGGGGMAERLSDSTGLGSRSVA AVAGVALTGGVLVASGPLYAGWMNQRDLGPVAGLEEAELPLNDWEAIEADPWEPGYRNARAAFHRHYVDGQGVPVGVYVG YYREQFRHGNMITWDNTMAGRDRDAWRQRSAGRAEIDDWTRPARFELTGPNRQILAWRWYWVTDRLTTSPHEVKARESLS RLLGGRDDAALVVLYALYPDDPEEVEPALRRFAEAALPELLGTLEEVRGR
Sequences:
>Translated_530_residues MRQLMASNPDAIVGGGLGDRAPWYLHGAALALLGVVLAIAFLPTYQAIVGIWSRSETFAHGFLIVPIVLFLVYRLRHPLA DQQPRVQPLALVPVAGLVLLWVLGALVDVDSVRHFAAVLLIPAVVWLSLGNAVAWTLLFPLAYLISAVPFGEFLVPPLMD WTADFTVWAVQQTGVPVYREGLNFELPTGRWSVVEACSGVRYLIATVALGTLYAYLVYRSWMRRLVFVAFSFLVPILANG LRAYAIVMIGHLSGMELAAGVDHLIYGWVFFGAVIALMFWIGTYWREDRPISEGAAPGPGGGGMAERLSDSTGLGSRSVA AVAGVALTGGVLVASGPLYAGWMNQRDLGPVAGLEEAELPLNDWEAIEADPWEPGYRNARAAFHRHYVDGQGVPVGVYVG YYREQFRHGNMITWDNTMAGRDRDAWRQRSAGRAEIDDWTRPARFELTGPNRQILAWRWYWVTDRLTTSPHEVKARESLS RLLGGRDDAALVVLYALYPDDPEEVEPALRRFAEAALPELLGTLEEVRGR >Mature_530_residues MRQLMASNPDAIVGGGLGDRAPWYLHGAALALLGVVLAIAFLPTYQAIVGIWSRSETFAHGFLIVPIVLFLVYRLRHPLA DQQPRVQPLALVPVAGLVLLWVLGALVDVDSVRHFAAVLLIPAVVWLSLGNAVAWTLLFPLAYLISAVPFGEFLVPPLMD WTADFTVWAVQQTGVPVYREGLNFELPTGRWSVVEACSGVRYLIATVALGTLYAYLVYRSWMRRLVFVAFSFLVPILANG LRAYAIVMIGHLSGMELAAGVDHLIYGWVFFGAVIALMFWIGTYWREDRPISEGAAPGPGGGGMAERLSDSTGLGSRSVA AVAGVALTGGVLVASGPLYAGWMNQRDLGPVAGLEEAELPLNDWEAIEADPWEPGYRNARAAFHRHYVDGQGVPVGVYVG YYREQFRHGNMITWDNTMAGRDRDAWRQRSAGRAEIDDWTRPARFELTGPNRQILAWRWYWVTDRLTTSPHEVKARESLS RLLGGRDDAALVVLYALYPDDPEEVEPALRRFAEAALPELLGTLEEVRGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58419; Mature: 58419
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQLMASNPDAIVGGGLGDRAPWYLHGAALALLGVVLAIAFLPTYQAIVGIWSRSETFAH CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH GFLIVPIVLFLVYRLRHPLADQQPRVQPLALVPVAGLVLLWVLGALVDVDSVRHFAAVLL HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPAVVWLSLGNAVAWTLLFPLAYLISAVPFGEFLVPPLMDWTADFTVWAVQQTGVPVYRE HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCEEEEEECCCCCHHHC GLNFELPTGRWSVVEACSGVRYLIATVALGTLYAYLVYRSWMRRLVFVAFSFLVPILANG CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LRAYAIVMIGHLSGMELAAGVDHLIYGWVFFGAVIALMFWIGTYWREDRPISEGAAPGPG HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GGGMAERLSDSTGLGSRSVAAVAGVALTGGVLVASGPLYAGWMNQRDLGPVAGLEEAELP CCCHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCCCCCC LNDWEAIEADPWEPGYRNARAAFHRHYVDGQGVPVGVYVGYYREQFRHGNMITWDNTMAG CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCC RDRDAWRQRSAGRAEIDDWTRPARFELTGPNRQILAWRWYWVTDRLTTSPHEVKARESLS CCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH RLLGGRDDAALVVLYALYPDDPEEVEPALRRFAEAALPELLGTLEEVRGR HHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRQLMASNPDAIVGGGLGDRAPWYLHGAALALLGVVLAIAFLPTYQAIVGIWSRSETFAH CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH GFLIVPIVLFLVYRLRHPLADQQPRVQPLALVPVAGLVLLWVLGALVDVDSVRHFAAVLL HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPAVVWLSLGNAVAWTLLFPLAYLISAVPFGEFLVPPLMDWTADFTVWAVQQTGVPVYRE HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCEEEEEECCCCCHHHC GLNFELPTGRWSVVEACSGVRYLIATVALGTLYAYLVYRSWMRRLVFVAFSFLVPILANG CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LRAYAIVMIGHLSGMELAAGVDHLIYGWVFFGAVIALMFWIGTYWREDRPISEGAAPGPG HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GGGMAERLSDSTGLGSRSVAAVAGVALTGGVLVASGPLYAGWMNQRDLGPVAGLEEAELP CCCHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCCCCCC LNDWEAIEADPWEPGYRNARAAFHRHYVDGQGVPVGVYVGYYREQFRHGNMITWDNTMAG CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCC RDRDAWRQRSAGRAEIDDWTRPARFELTGPNRQILAWRWYWVTDRLTTSPHEVKARESLS CCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH RLLGGRDDAALVVLYALYPDDPEEVEPALRRFAEAALPELLGTLEEVRGR HHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA