| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998273
Identifier: 121998273
GI number: 121998273
Start: 1610345
End: 1611574
Strand: Reverse
Name: 121998273
Synonym: Hhal_1491
Alternate gene names: NA
Gene position: 1611574-1610345 (Counterclockwise)
Preceding gene: 121998274
Following gene: 121998270
Centisome position: 60.17
GC content: 61.54
Gene sequence:
>1230_bases ATGAGTACTGAGAAGGACCCGAGCAAAGGCTATGTGGCGATCCTCGGTTGGAGCATCAACTGCATCGACGCCCTGGACCG TTTCGATCGCCGCTACGTCATCGTCGCCCCGGAGTGGGCCGAGGAGTACGCCCGGGAGCACGATATCCCGTTTATTCCCT GGGATTTCGAGCGGCTGAATGACCGCTCCATGGAGATTGCCGAACGCCTGCGTGACGAGGGGGTGGATGTTGCCATCCCG CTGTTCGAGGAGACGGTGGAGTGGGCCGGGGCCATCAATGCGGTCCTCATGGGGGATCCGCGACTGCACGGGCAGGCCGT GCTGTTCCGCGACAAAGCGTTGATGAAGCGCCGCGCGCAGCTCGGGGGCATTCGTGTCGGCATCTTCGAAGAGGCCCACG ACAAGGACGACGTGATCCGCTTCCTCAAGCGGGTGAACCAGACCCTGCTCAAGCTGGACGGGGATCCTAACGACCCCATT CACCTGAAGGCCTTCGACAAGGCAGGTTGCCTCGGGCACCGCGTCATCCGCACCCCGGATGAGGTGGATCTGATCCCTGA AGAGGAGTTCCCGGTGCTCATGGAGAGCCACCTGGACGGCTGGGAGTTCGCCGTGGAGGCGTGGATCCACGATGGCAAGA TCCGCTTCCTGAATATCTCCGAGTACGTCACGCTCGGCTACTCGGTCTTCGTCCCGGCCACGCCGGAGCTGGAAAGCTGG CGGGAGCTGATCACCCGCGAGATCGAGAAACTGATCAAGACCTTCGATATCCGCTTCGGCTTCATCCACCCCGAGTACTT CGTGACCAGTGACGGGACCATGTACTTCGGCGAGGTGGCTTACCGGCCGCCCGGTTTTAAGGTCTTTGAGCTGCTCGAGC GTGCTTACGGCTTCAATGCCTATCAGGGTATGGTTCTGGCCTTCGATCCGAAAACCACCGAGGAAGAGATCACCGCCTTC TTCCCGCGCGAGGTGGTCGGCGCCAAGGGCTATGCGGGCTGTTTCGGGGTCTATCCGCGGCGGCGGGTGGTCAGCCGTCT GGAGATCCCGGAGGAGACTGAGCAGCACGAATACTTCGAGTACCACGAACTCACCCCGCCTCAGGAGGAGGTGGTCACCA AACGGACCGCCTTCGGTACCCACTGGGGGCTTGTTTACTTCTTCGGAGACAATCCGCACCGGCTCCGGGATCTGCTCAAA CACCAGGAGGAGCTGGACTACTACGTCTGA
Upstream 100 bases:
>100_bases CTGCAGGGTAGCCCGTGATGTCATTGCGGATGTCAGCCCGCCTGCCTCCGGCTTTGCTCGACGGGCCCCTCGATCACCCG CAATCGGAGCACCCCGCCGT
Downstream 100 bases:
>100_bases TTGGCGCCGTGCGCGCTCCCGGGCGGGGCGCGCACGATGGTGGTGCGGTGTGCGCAGCCGGCCTATCGGCCGGACGGCCT CAGTGGATCTCGCGCCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MSTEKDPSKGYVAILGWSINCIDALDRFDRRYVIVAPEWAEEYAREHDIPFIPWDFERLNDRSMEIAERLRDEGVDVAIP LFEETVEWAGAINAVLMGDPRLHGQAVLFRDKALMKRRAQLGGIRVGIFEEAHDKDDVIRFLKRVNQTLLKLDGDPNDPI HLKAFDKAGCLGHRVIRTPDEVDLIPEEEFPVLMESHLDGWEFAVEAWIHDGKIRFLNISEYVTLGYSVFVPATPELESW RELITREIEKLIKTFDIRFGFIHPEYFVTSDGTMYFGEVAYRPPGFKVFELLERAYGFNAYQGMVLAFDPKTTEEEITAF FPREVVGAKGYAGCFGVYPRRRVVSRLEIPEETEQHEYFEYHELTPPQEEVVTKRTAFGTHWGLVYFFGDNPHRLRDLLK HQEELDYYV
Sequences:
>Translated_409_residues MSTEKDPSKGYVAILGWSINCIDALDRFDRRYVIVAPEWAEEYAREHDIPFIPWDFERLNDRSMEIAERLRDEGVDVAIP LFEETVEWAGAINAVLMGDPRLHGQAVLFRDKALMKRRAQLGGIRVGIFEEAHDKDDVIRFLKRVNQTLLKLDGDPNDPI HLKAFDKAGCLGHRVIRTPDEVDLIPEEEFPVLMESHLDGWEFAVEAWIHDGKIRFLNISEYVTLGYSVFVPATPELESW RELITREIEKLIKTFDIRFGFIHPEYFVTSDGTMYFGEVAYRPPGFKVFELLERAYGFNAYQGMVLAFDPKTTEEEITAF FPREVVGAKGYAGCFGVYPRRRVVSRLEIPEETEQHEYFEYHELTPPQEEVVTKRTAFGTHWGLVYFFGDNPHRLRDLLK HQEELDYYV >Mature_408_residues STEKDPSKGYVAILGWSINCIDALDRFDRRYVIVAPEWAEEYAREHDIPFIPWDFERLNDRSMEIAERLRDEGVDVAIPL FEETVEWAGAINAVLMGDPRLHGQAVLFRDKALMKRRAQLGGIRVGIFEEAHDKDDVIRFLKRVNQTLLKLDGDPNDPIH LKAFDKAGCLGHRVIRTPDEVDLIPEEEFPVLMESHLDGWEFAVEAWIHDGKIRFLNISEYVTLGYSVFVPATPELESWR ELITREIEKLIKTFDIRFGFIHPEYFVTSDGTMYFGEVAYRPPGFKVFELLERAYGFNAYQGMVLAFDPKTTEEEITAFF PREVVGAKGYAGCFGVYPRRRVVSRLEIPEETEQHEYFEYHELTPPQEEVVTKRTAFGTHWGLVYFFGDNPHRLRDLLKH QEELDYYV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47597; Mature: 47465
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEKDPSKGYVAILGWSINCIDALDRFDRRYVIVAPEWAEEYAREHDIPFIPWDFERLN CCCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHCC DRSMEIAERLRDEGVDVAIPLFEETVEWAGAINAVLMGDPRLHGQAVLFRDKALMKRRAQ CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHHHHH LGGIRVGIFEEAHDKDDVIRFLKRVNQTLLKLDGDPNDPIHLKAFDKAGCLGHRVIRTPD HCCEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCCCCCEECCCC EVDLIPEEEFPVLMESHLDGWEFAVEAWIHDGKIRFLNISEYVTLGYSVFVPATPELESW CCCCCCCCCCCHHHHHCCCCHHHEEEEEEECCEEEEEEHHHHEEECEEEEECCCCCHHHH RELITREIEKLIKTFDIRFGFIHPEYFVTSDGTMYFGEVAYRPPGFKVFELLERAYGFNA HHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHCCCC YQGMVLAFDPKTTEEEITAFFPREVVGAKGYAGCFGVYPRRRVVSRLEIPEETEQHEYFE CCCEEEEECCCCCHHHHHHHCCHHHHCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCHHH YHELTPPQEEVVTKRTAFGTHWGLVYFFGDNPHRLRDLLKHQEELDYYV HHCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure STEKDPSKGYVAILGWSINCIDALDRFDRRYVIVAPEWAEEYAREHDIPFIPWDFERLN CCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCHHHCC DRSMEIAERLRDEGVDVAIPLFEETVEWAGAINAVLMGDPRLHGQAVLFRDKALMKRRAQ CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHHHHH LGGIRVGIFEEAHDKDDVIRFLKRVNQTLLKLDGDPNDPIHLKAFDKAGCLGHRVIRTPD HCCEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCCCCCEECCCC EVDLIPEEEFPVLMESHLDGWEFAVEAWIHDGKIRFLNISEYVTLGYSVFVPATPELESW CCCCCCCCCCCHHHHHCCCCHHHEEEEEEECCEEEEEEHHHHEEECEEEEECCCCCHHHH RELITREIEKLIKTFDIRFGFIHPEYFVTSDGTMYFGEVAYRPPGFKVFELLERAYGFNA HHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCEEEEEEEECCCCHHHHHHHHHHHCCCC YQGMVLAFDPKTTEEEITAFFPREVVGAKGYAGCFGVYPRRRVVSRLEIPEETEQHEYFE CCCEEEEECCCCCHHHHHHHCCHHHHCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCHHH YHELTPPQEEVVTKRTAFGTHWGLVYFFGDNPHRLRDLLKHQEELDYYV HHCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA