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The map label for this gene is ygeR [H]

Identifier: 121998210

GI number: 121998210

Start: 1542087

End: 1542824

Strand: Reverse

Name: ygeR [H]

Synonym: Hhal_1428

Alternate gene names: 121998210

Gene position: 1542824-1542087 (Counterclockwise)

Preceding gene: 121998211

Following gene: 121998209

Centisome position: 57.6

GC content: 65.99

Gene sequence:

>738_bases
ATGCTGGGCACCGCGTCGCGCATCCTGGTCTGGGCCTTGATCCTCCTCCTGATACCCGGTTGCGCGACGCTCTGGGACGG
TGACTGGGAGGAGGATGGCCACCGGCGAATCTATCTTTACGAGGTGCAGCCGGGCGACACCCTAAGCCGCATCGCCTGGC
GACATGGGTTGCGTGTCGAGCAGCTGCAGCGCTGGAATGAGCTATCCAGTCCGGACCAGATCCAGGCCGGGGCGTATCTG
GTCCTGAACCCGCCAGGCGGTGCCGCGGACGGCGACGACCCGACACGGGATGCAAGCGAGGCACCGGCGGGTGACACCAC
CAGCGAACCGCCGCCCCCTCCGGATGATCCCCCCGCCTATGAACTCGACTGGGTCTGGCCTGCCGAGGGCGAGGTGCAGA
GGTCCTATGCCACCGATAGTGGGGGCAAGAGCGGTATCCAGATTGGCGGTTCGGAGGGGGACTCGATCCGCGCTGCGGCC
GATGGCGAGGTGGTCTACAGTGGTAGTGGGCTGCGGGGGTACGGCAATCTGGTCATCCTCATGCACGATGATCGCTTCCT
GTCGGCCTACGGCTACAACCGCACCCTCAAGGTTCAGGAAGGGGATCGAGTCAGCGGTGGGGATCCGATTGCGGAGATGG
GGCGTGCACCCGGGGCCGAGGCAGCCAGTCTACACTTCGAGATCCGCATCGATGGCGAGGTGGTGGACCCGGAGGCCTAC
CTCCCGGCGCGAGATTAG

Upstream 100 bases:

>100_bases
CTTGAGCCCTGGTTGCTGCGCCACGTCGAGCGGCTCGGGTGGATCAGCGTCATCGTGTTACTGCTCGGAATACTGTGGGT
CAAGTACGGGTAGCCGTCCG

Downstream 100 bases:

>100_bases
GACAGGTTAAAAAGAAGTCGAATCGTTCATACTTTTCCTATTGCGCTCTTGCCGGTTTGGTAATAGCTTAACCATAGAAA
TTTGATTACCGTCAAAACAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLGTASRILVWALILLLIPGCATLWDGDWEEDGHRRIYLYEVQPGDTLSRIAWRHGLRVEQLQRWNELSSPDQIQAGAYL
VLNPPGGAADGDDPTRDASEAPAGDTTSEPPPPPDDPPAYELDWVWPAEGEVQRSYATDSGGKSGIQIGGSEGDSIRAAA
DGEVVYSGSGLRGYGNLVILMHDDRFLSAYGYNRTLKVQEGDRVSGGDPIAEMGRAPGAEAASLHFEIRIDGEVVDPEAY
LPARD

Sequences:

>Translated_245_residues
MLGTASRILVWALILLLIPGCATLWDGDWEEDGHRRIYLYEVQPGDTLSRIAWRHGLRVEQLQRWNELSSPDQIQAGAYL
VLNPPGGAADGDDPTRDASEAPAGDTTSEPPPPPDDPPAYELDWVWPAEGEVQRSYATDSGGKSGIQIGGSEGDSIRAAA
DGEVVYSGSGLRGYGNLVILMHDDRFLSAYGYNRTLKVQEGDRVSGGDPIAEMGRAPGAEAASLHFEIRIDGEVVDPEAY
LPARD
>Mature_245_residues
MLGTASRILVWALILLLIPGCATLWDGDWEEDGHRRIYLYEVQPGDTLSRIAWRHGLRVEQLQRWNELSSPDQIQAGAYL
VLNPPGGAADGDDPTRDASEAPAGDTTSEPPPPPDDPPAYELDWVWPAEGEVQRSYATDSGGKSGIQIGGSEGDSIRAAA
DGEVVYSGSGLRGYGNLVILMHDDRFLSAYGYNRTLKVQEGDRVSGGDPIAEMGRAPGAEAASLHFEIRIDGEVVDPEAY
LPARD

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=239, Percent_Identity=36.8200836820084, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789099, Length=121, Percent_Identity=50.4132231404959, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=38.3333333333333, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26442; Mature: 26442

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGTASRILVWALILLLIPGCATLWDGDWEEDGHRRIYLYEVQPGDTLSRIAWRHGLRVE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCHH
QLQRWNELSSPDQIQAGAYLVLNPPGGAADGDDPTRDASEAPAGDTTSEPPPPPDDPPAY
HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
ELDWVWPAEGEVQRSYATDSGGKSGIQIGGSEGDSIRAAADGEVVYSGSGLRGYGNLVIL
EEEEEECCCCCEEEEECCCCCCCCCEEECCCCCCEEEEECCCCEEEECCCCCCCCCEEEE
MHDDRFLSAYGYNRTLKVQEGDRVSGGDPIAEMGRAPGAEAASLHFEIRIDGEVVDPEAY
EECCCEEEECCCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEECCCCC
LPARD
CCCCC
>Mature Secondary Structure
MLGTASRILVWALILLLIPGCATLWDGDWEEDGHRRIYLYEVQPGDTLSRIAWRHGLRVE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCHH
QLQRWNELSSPDQIQAGAYLVLNPPGGAADGDDPTRDASEAPAGDTTSEPPPPPDDPPAY
HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
ELDWVWPAEGEVQRSYATDSGGKSGIQIGGSEGDSIRAAADGEVVYSGSGLRGYGNLVIL
EEEEEECCCCCEEEEECCCCCCCCCEEECCCCCCEEEEECCCCEEEECCCCCCCCCEEEE
MHDDRFLSAYGYNRTLKVQEGDRVSGGDPIAEMGRAPGAEAASLHFEIRIDGEVVDPEAY
EECCCEEEECCCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEECCCCC
LPARD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]