| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998167
Identifier: 121998167
GI number: 121998167
Start: 1492860
End: 1493423
Strand: Reverse
Name: 121998167
Synonym: Hhal_1385
Alternate gene names: NA
Gene position: 1493423-1492860 (Counterclockwise)
Preceding gene: 121998169
Following gene: 121998166
Centisome position: 55.76
GC content: 63.48
Gene sequence:
>564_bases ATGAGCGAGTACGAGCAAAACGTGAACACCGAGGAACATTCCGACCCGCGGGCGCTGAGCATCAGCGAGATCGTCGAGCA GATGCGCATCGTTCGGGTTCGGTACACCCTGGCCGACACCTCGGCCTACGTCCGCTACCTGCCGCGATTCGACCCGCAGC CTGAAGATCTGACCGTCCACGTTGACCCCTTCGCCGAGCACCACGAGGGTGCCGAGATCACCGGGGAGTTCCGGCTTCCG GAGCTGGTGAACGAGCTCATCCACGCCTATATCCGGGTCCACGTCTTCGCGAGCCGCGAGCAGCGCAACTACTTCGTCGG CGGTTTCGACAATGCACTGACGCAGCTCGATTTCGTCGGCGGTGGCTTCGGCTTCAATCGCCTGTGGATCACCGTGGGGA CGACGAACATCGGCGTCCCGGTGTGCATCTATCTCGGGCAGCGGACCGCCGTGAACCGCCAGCCCACCGTCTCACTGGTC GACCACCGCGAAAGTTCCCGCGGTGATGTGGTCTACCGGGCCGTGGGTGGCTACGGCGATCACGTCGGCGAAGAGTACTT CTAG
Upstream 100 bases:
>100_bases GCGTCGGCAATGTGCCGCCGGACGGGGAGAGAACCCCCCGGGTTGGGTGAGCGACGGTATTTGCATTACCATCACCGGGT TATCACATCACGGAGGCTCC
Downstream 100 bases:
>100_bases AGCACCAGGGGGGGCGAATCGTGCGTGCACAGAAAGGCCCGCTGAAAGGGCTGAATATTCCGTTGACGGGCACGGCCACG CTGATCGTGCTCGCTTTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MSEYEQNVNTEEHSDPRALSISEIVEQMRIVRVRYTLADTSAYVRYLPRFDPQPEDLTVHVDPFAEHHEGAEITGEFRLP ELVNELIHAYIRVHVFASREQRNYFVGGFDNALTQLDFVGGGFGFNRLWITVGTTNIGVPVCIYLGQRTAVNRQPTVSLV DHRESSRGDVVYRAVGGYGDHVGEEYF
Sequences:
>Translated_187_residues MSEYEQNVNTEEHSDPRALSISEIVEQMRIVRVRYTLADTSAYVRYLPRFDPQPEDLTVHVDPFAEHHEGAEITGEFRLP ELVNELIHAYIRVHVFASREQRNYFVGGFDNALTQLDFVGGGFGFNRLWITVGTTNIGVPVCIYLGQRTAVNRQPTVSLV DHRESSRGDVVYRAVGGYGDHVGEEYF >Mature_186_residues SEYEQNVNTEEHSDPRALSISEIVEQMRIVRVRYTLADTSAYVRYLPRFDPQPEDLTVHVDPFAEHHEGAEITGEFRLPE LVNELIHAYIRVHVFASREQRNYFVGGFDNALTQLDFVGGGFGFNRLWITVGTTNIGVPVCIYLGQRTAVNRQPTVSLVD HRESSRGDVVYRAVGGYGDHVGEEYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21279; Mature: 21148
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEYEQNVNTEEHSDPRALSISEIVEQMRIVRVRYTLADTSAYVRYLPRFDPQPEDLTVH CCCHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHEEEECCHHHHHHHCCCCCCCCCCEEEE VDPFAEHHEGAEITGEFRLPELVNELIHAYIRVHVFASREQRNYFVGGFDNALTQLDFVG ECCCCCCCCCCEEEECEECHHHHHHHHHHHHHHEEEECCCCCCEEECCHHHHHHHHHHCC GGFGFNRLWITVGTTNIGVPVCIYLGQRTAVNRQPTVSLVDHRESSRGDVVYRAVGGYGD CCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCC HVGEEYF CCCCCCC >Mature Secondary Structure SEYEQNVNTEEHSDPRALSISEIVEQMRIVRVRYTLADTSAYVRYLPRFDPQPEDLTVH CCHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHEEEECCHHHHHHHCCCCCCCCCCEEEE VDPFAEHHEGAEITGEFRLPELVNELIHAYIRVHVFASREQRNYFVGGFDNALTQLDFVG ECCCCCCCCCCEEEECEECHHHHHHHHHHHHHHEEEECCCCCCEEECCHHHHHHHHHHCC GGFGFNRLWITVGTTNIGVPVCIYLGQRTAVNRQPTVSLVDHRESSRGDVVYRAVGGYGD CCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCC HVGEEYF CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA