| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is yigI [C]
Identifier: 121998160
GI number: 121998160
Start: 1485906
End: 1486364
Strand: Reverse
Name: yigI [C]
Synonym: Hhal_1378
Alternate gene names: 121998160
Gene position: 1486364-1485906 (Counterclockwise)
Preceding gene: 121998164
Following gene: 121998159
Centisome position: 55.49
GC content: 71.24
Gene sequence:
>459_bases ATGACCGCAGAGACGGACAACGCTGCCGGGATCGGCCTCGAGCACGCCCGGCGGCTCTTTCGGGGCTCGCCCCACGGGGC CCTCATCGGCCTGGAGCTGGTGGAACTCGGTGCCGAGTACCTGATCGCCCGGGTGCCGTACCGCCCGGAGCTGATCGGCA ACCCCGAGACCGGGCACATCCACGGCGGGGTGATCACCACCTTGATCGATCAGAGCTGCGGGGCGGCCGTGCTGATGGCC ACCGGCCCGGAGGAGCGTATCGTTACCCTCGATCTGCGGGTCGATCACCTGCGGCCGGCGGCCCCGGGGCGGGATGTCTA CGCCCGCTGCGAGTGCTACCGCCTGGCCAACGAGGTGGCCTTCGCCCGGGCCGTCGCCTACGAGGATGACCCGGCGGAGC CCTTCGCTACCAGCATGAGCGCCTTCATGCGCCTGCGCGAGGGGGTGGGGCGTGGCTGA
Upstream 100 bases:
>100_bases TTGCTTGATCTCTGCCGGCGGGCTCGTAGACTGGGCGGCGTCACCACCCACGTGACGGCGGCCTCACACCGCGCAGGCCG CCGCAGCCAAGGGACAGAAC
Downstream 100 bases:
>100_bases ACTGCTGGAACAGGTTCGCGCCGCCCGTGCCGCCGGCGATTACGAACGCCTCACCGACCTGGTGCCCTACGCCCGCTTGA TCGGCATGCGCTTCGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Thioesterase Family Protein; Phenylacetic Acid Degradation-Related Protein; Phenylacetic Acid Degradation-Like Protein; Thioesterase Superfamily; Thioesterase Family Protein Domain Protein; Conserved Domain Protein; Protein Possibly Involved In Aromatic Compounds Catabolism
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MTAETDNAAGIGLEHARRLFRGSPHGALIGLELVELGAEYLIARVPYRPELIGNPETGHIHGGVITTLIDQSCGAAVLMA TGPEERIVTLDLRVDHLRPAAPGRDVYARCECYRLANEVAFARAVAYEDDPAEPFATSMSAFMRLREGVGRG
Sequences:
>Translated_152_residues MTAETDNAAGIGLEHARRLFRGSPHGALIGLELVELGAEYLIARVPYRPELIGNPETGHIHGGVITTLIDQSCGAAVLMA TGPEERIVTLDLRVDHLRPAAPGRDVYARCECYRLANEVAFARAVAYEDDPAEPFATSMSAFMRLREGVGRG >Mature_151_residues TAETDNAAGIGLEHARRLFRGSPHGALIGLELVELGAEYLIARVPYRPELIGNPETGHIHGGVITTLIDQSCGAAVLMAT GPEERIVTLDLRVDHLRPAAPGRDVYARCECYRLANEVAFARAVAYEDDPAEPFATSMSAFMRLREGVGRG
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16400; Mature: 16269
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAETDNAAGIGLEHARRLFRGSPHGALIGLELVELGAEYLIARVPYRPELIGNPETGHI CCCCCCCCCCCCHHHHHHHHCCCCCCEEHHHHHHHHCHHHHHEECCCCCCCCCCCCCCEE HGGVITTLIDQSCGAAVLMATGPEERIVTLDLRVDHLRPAAPGRDVYARCECYRLANEVA CCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH FARAVAYEDDPAEPFATSMSAFMRLREGVGRG HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TAETDNAAGIGLEHARRLFRGSPHGALIGLELVELGAEYLIARVPYRPELIGNPETGHI CCCCCCCCCCCHHHHHHHHCCCCCCEEHHHHHHHHCHHHHHEECCCCCCCCCCCCCCEE HGGVITTLIDQSCGAAVLMATGPEERIVTLDLRVDHLRPAAPGRDVYARCECYRLANEVA CCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH FARAVAYEDDPAEPFATSMSAFMRLREGVGRG HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA