| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998159
Identifier: 121998159
GI number: 121998159
Start: 1485455
End: 1485913
Strand: Reverse
Name: 121998159
Synonym: Hhal_1377
Alternate gene names: NA
Gene position: 1485913-1485455 (Counterclockwise)
Preceding gene: 121998160
Following gene: 121998158
Centisome position: 55.48
GC content: 70.15
Gene sequence:
>459_bases GTGGCTGAACTGCTGGAACAGGTTCGCGCCGCCCGTGCCGCCGGCGATTACGAACGCCTCACCGACCTGGTGCCCTACGC CCGCTTGATCGGCATGCGCTTCGAGGCGTGCCCCGAGGGCGAAGGCCTGTGCATCCGCCTGCCGTACCGGGACGATCTCA TTGGCCGGCCGGGCAGCGGCTCGCTGCACGGCGGGCTGCTGGGGGCCTTCCTGGAGCACGGCGCGATCATGCAGATCCTC TGGGAGGGGCAGAGCTGCTATCTGCCGCGCATCATCAACTTCCACGTCGACTACCTGCGCCGCGGGGCGCAGGAGACTAC CTACGCCGCCGTGGAGATCCGACGTCAGGGGCGCCGCGTGGCCAACGTCCACGCCAGCGCCTGGCAGTCGGATCCCAAGC GTCCCATCGCTGCGGCGCGGGGGCACTTCCTGCTGACACCGCCGGAGGGGACCGACTGA
Upstream 100 bases:
>100_bases GAGGTGGCCTTCGCCCGGGCCGTCGCCTACGAGGATGACCCGGCGGAGCCCTTCGCTACCAGCATGAGCGCCTTCATGCG CCTGCGCGAGGGGGTGGGGC
Downstream 100 bases:
>100_bases TATGACCGAGTCGACGCCGCAGCCGCCCCGGGCCGCCGAGACCCCCGAGGTGATCGAACGCTTCGGGGTGCGCCGCACCG ACCCCTACGCCTGGTTGCGC
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Thioesterase Family Protein; Phenylacetic Acid Degradation-Related Protein; Thioesterase Superfamily; Phenylacetic Acid Degradation-Like Protein; Thioesterase Family Protein Domain Protein; Protein Possibly Involved In Aromatic Compounds Catabolism
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MAELLEQVRAARAAGDYERLTDLVPYARLIGMRFEACPEGEGLCIRLPYRDDLIGRPGSGSLHGGLLGAFLEHGAIMQIL WEGQSCYLPRIINFHVDYLRRGAQETTYAAVEIRRQGRRVANVHASAWQSDPKRPIAAARGHFLLTPPEGTD
Sequences:
>Translated_152_residues MAELLEQVRAARAAGDYERLTDLVPYARLIGMRFEACPEGEGLCIRLPYRDDLIGRPGSGSLHGGLLGAFLEHGAIMQIL WEGQSCYLPRIINFHVDYLRRGAQETTYAAVEIRRQGRRVANVHASAWQSDPKRPIAAARGHFLLTPPEGTD >Mature_151_residues AELLEQVRAARAAGDYERLTDLVPYARLIGMRFEACPEGEGLCIRLPYRDDLIGRPGSGSLHGGLLGAFLEHGAIMQILW EGQSCYLPRIINFHVDYLRRGAQETTYAAVEIRRQGRRVANVHASAWQSDPKRPIAAARGHFLLTPPEGTD
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16898; Mature: 16766
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAELLEQVRAARAAGDYERLTDLVPYARLIGMRFEACPEGEGLCIRLPYRDDLIGRPGSG CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHCCCCCCCCEEEECCCCCCCCCCCCCC SLHGGLLGAFLEHGAIMQILWEGQSCYLPRIINFHVDYLRRGAQETTYAAVEIRRQGRRV CCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH ANVHASAWQSDPKRPIAAARGHFLLTPPEGTD HHHHHHHHCCCCCCCHHHCCCCEEECCCCCCC >Mature Secondary Structure AELLEQVRAARAAGDYERLTDLVPYARLIGMRFEACPEGEGLCIRLPYRDDLIGRPGSG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHCCCCCCCCEEEECCCCCCCCCCCCCC SLHGGLLGAFLEHGAIMQILWEGQSCYLPRIINFHVDYLRRGAQETTYAAVEIRRQGRRV CCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH ANVHASAWQSDPKRPIAAARGHFLLTPPEGTD HHHHHHHHCCCCCCCHHHCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA