Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998084

Identifier: 121998084

GI number: 121998084

Start: 1411057

End: 1411428

Strand: Reverse

Name: 121998084

Synonym: Hhal_1300

Alternate gene names: NA

Gene position: 1411428-1411057 (Counterclockwise)

Preceding gene: 121998086

Following gene: 121998081

Centisome position: 52.7

GC content: 64.52

Gene sequence:

>372_bases
ATGAGCCAGCCTTTCGAGTCCCTCAATGTGCTCGGCCAGCCCCTCGCGCCTTGTAGCACTCAGCCTTTGACCGGCTTTTA
CCGGGACGGCTGCTGCAATACTGGTCACGAGGACGTTGGAATCCACACGGTCTGCGCCCGGCTGGACGAGGCGTTTCTGA
GCTTTACCCGGGAGCAGGGCAACGACCTGACGGCCCCCAATCCGGGCATGGGGTTTCCCGGCCTTCAGCCCGGGGACCGA
TGGTGTCGTTGCGCCGGCCGCTGGATGGAGGCCTACCGCGCGGGAGTGGCTCCGATGGTGGATCTGCACGCTAAGCATGC
CGAGACCCTGGCCGTGATTGACCTCGATACGCTGAAGGCCTACGCGCTCTGA

Upstream 100 bases:

>100_bases
AATGTCGGGGTGCGCATCGACGGGGTGCTTGACTACTTCGGGCGCCGGTGGATGAGCACCCCTGCCGCATGATCCCCCAT
CTTCGGAGTTGGAGATCGCA

Downstream 100 bases:

>100_bases
GTGAGGGGGCAAAGCCACTGGCTCGGCGCTCCGATTTGCGCCTGTCAACCGGGGTCGACTAGTGCGCCCTGCTGGCCCGC
GATTTGGGGCCGGGCGCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQGNDLTAPNPGMGFPGLQPGDR
WCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKAYAL

Sequences:

>Translated_123_residues
MSQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQGNDLTAPNPGMGFPGLQPGDR
WCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKAYAL
>Mature_122_residues
SQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQGNDLTAPNPGMGFPGLQPGDRW
CRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKAYAL

Specific function: Unknown

COG id: COG3651

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13382; Mature: 13251

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQG
CCCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
NDLTAPNPGMGFPGLQPGDRWCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEHHHHHH
YAL
HCC
>Mature Secondary Structure 
SQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQG
CCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
NDLTAPNPGMGFPGLQPGDRWCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEHHHHHH
YAL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA