| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998062
Identifier: 121998062
GI number: 121998062
Start: 1385569
End: 1385946
Strand: Reverse
Name: 121998062
Synonym: Hhal_1272
Alternate gene names: NA
Gene position: 1385946-1385569 (Counterclockwise)
Preceding gene: 121998064
Following gene: 121998061
Centisome position: 51.74
GC content: 66.4
Gene sequence:
>378_bases ATGACCGCATCCACCACACGACCGGTCGTATTCTTCGATGGGCAGTGCCCCGTCTGCAGCCGCGAGATCGGTCTCTATCA GCGCCTGGATACCGCCGGGGCGGTGGAGTGGCGTGATCTCCACGCGCCGGGCGCCCTGGACGACACCGATCTGACCTGGG ATCAGGCGATGCAGCGCTTTCATTGCCGGGACGTCGATGGAGTGATGCGCAGCGGGGTCGATGCCTTCGCCCTGGTCTGG TCGTATCTCCCGTACTGGCGCTGGGCGTCGCGGATCGTCCGGGGGCTGGGACTGGTCAGGCCCATGGAGCCGCTTTACGA TTGGTATGCGCGCCGTCGCTACAGCCGGAGCTGCTCGGTGCAGGGGGACTGCCGCTAA
Upstream 100 bases:
>100_bases CTCCGCCTGCCGGTCGAGTAGATGCCCCATGTTTTGTGGGCTGCCTGATGCTATGCTGAGATCTAGAATCGTTCCAGATA AATACGGTAAGGAGTCCACC
Downstream 100 bases:
>100_bases GCGCGGCGCCCTGGAGCACGCCCGGACGGCAGTGACGCAGGTGCGTGTGACCCGATTCCGGCGGAAAGGAGCCCCGCTTG GCGGCCGAGCCATCCATCGA
Product: putative thiol-disulfide oxidoreductase DCC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MTASTTRPVVFFDGQCPVCSREIGLYQRLDTAGAVEWRDLHAPGALDDTDLTWDQAMQRFHCRDVDGVMRSGVDAFALVW SYLPYWRWASRIVRGLGLVRPMEPLYDWYARRRYSRSCSVQGDCR
Sequences:
>Translated_125_residues MTASTTRPVVFFDGQCPVCSREIGLYQRLDTAGAVEWRDLHAPGALDDTDLTWDQAMQRFHCRDVDGVMRSGVDAFALVW SYLPYWRWASRIVRGLGLVRPMEPLYDWYARRRYSRSCSVQGDCR >Mature_124_residues TASTTRPVVFFDGQCPVCSREIGLYQRLDTAGAVEWRDLHAPGALDDTDLTWDQAMQRFHCRDVDGVMRSGVDAFALVWS YLPYWRWASRIVRGLGLVRPMEPLYDWYARRRYSRSCSVQGDCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14485; Mature: 14353
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASTTRPVVFFDGQCPVCSREIGLYQRLDTAGAVEWRDLHAPGALDDTDLTWDQAMQRF CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHH HCRDVDGVMRSGVDAFALVWSYLPYWRWASRIVRGLGLVRPMEPLYDWYARRRYSRSCSV CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC QGDCR CCCCC >Mature Secondary Structure TASTTRPVVFFDGQCPVCSREIGLYQRLDTAGAVEWRDLHAPGALDDTDLTWDQAMQRF CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHH HCRDVDGVMRSGVDAFALVWSYLPYWRWASRIVRGLGLVRPMEPLYDWYARRRYSRSCSV CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC QGDCR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA