| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is yaiL [H]
Identifier: 121997957
GI number: 121997957
Start: 1275094
End: 1275642
Strand: Reverse
Name: yaiL [H]
Synonym: Hhal_1167
Alternate gene names: 121997957
Gene position: 1275642-1275094 (Counterclockwise)
Preceding gene: 121997958
Following gene: 121997956
Centisome position: 47.63
GC content: 68.67
Gene sequence:
>549_bases ATGGCGAACTCGTTGCATGACCAGCTCCTCAAGGCGGGGCTGGTGGATGAGAAGAAGGTCAAGCAGGCCCGGCGGGCCAC GCCCAAGAAGAACAAGAAGAAGAAGGGCAAGGCCGCCGCCGAGCAGCCTGCCGAGCCCAGCGCGGCCGAGCGGGCCCGCC GTGAGGAGGCGGAACGTTCCCGGGCGCTCAACCGGCAGCGGCAGGCCGAGGCCGAGCGCAAGGCCGTGGAGGCCCAGATC CGTCAGCTCATCGAGACCCACCGCCAGGGGCGCGACGGAGCCGAGCTGCCCTACAACTTCCAGCACGGCAGCGTCATCCG CCAGCTGCTCGTGACCCCCGACCAGCGCGATCGCTTGGCTCAGGGGCGTCTGGCCATCGTCTGCCAGGAGGGGAGCTACG AGCTGGTGAGCCGCGAGGGGGCCGACAAGATCGCTGAACGCGACCCTGCGCGGGTGGTGGTCTGTAACGATCCTGCGGCC TCCGCCCAGGGTCCGGACGATGAGGACCCCTATGCCGGTTATGAGGTCCCCGACGATCTGATGTGGTAG
Upstream 100 bases:
>100_bases ACGCCCTGGCGCAGCTCGAGCGCGGGGCGCTGTGGCTCGATTTCATCGGGCAGCGTATCCTGCGCCAGCTCAACGGCGGT CGACTTCCGCGGGAGTAAAG
Downstream 100 bases:
>100_bases CCGGTCGGTACGACCCTGCTGCGACCGAACAAGCAAACGCCTGCCTCTCACCCTCCAGGCGGGTCGGGGAAACGCCGCTC ACTCTCTTCGGCAATGATCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERSRALNRQRQAEAERKAVEAQI RQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLAQGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAA SAQGPDDEDPYAGYEVPDDLMW
Sequences:
>Translated_182_residues MANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERSRALNRQRQAEAERKAVEAQI RQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLAQGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAA SAQGPDDEDPYAGYEVPDDLMW >Mature_181_residues ANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERSRALNRQRQAEAERKAVEAQIR QLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLAQGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAAS AQGPDDEDPYAGYEVPDDLMW
Specific function: Unknown
COG id: COG3122
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081724, Length=185, Percent_Identity=37.2972972972973, Blast_Score=111, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018636 [H]
Pfam domain/function: PF09831 DUF2058 [H]
EC number: NA
Molecular weight: Translated: 20360; Mature: 20229
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERS CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHH RALNRQRQAEAERKAVEAQIRQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH QGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAASAQGPDDEDPYAGYEVPDDL CCCEEEEECCCCHHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHC MW CC >Mature Secondary Structure ANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERS CCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHH RALNRQRQAEAERKAVEAQIRQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH QGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAASAQGPDDEDPYAGYEVPDDL CCCEEEEECCCCHHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHC MW CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]