| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997829
Identifier: 121997829
GI number: 121997829
Start: 1121075
End: 1121716
Strand: Reverse
Name: 121997829
Synonym: Hhal_1038
Alternate gene names: NA
Gene position: 1121716-1121075 (Counterclockwise)
Preceding gene: 121997830
Following gene: 121997828
Centisome position: 41.88
GC content: 66.36
Gene sequence:
>642_bases ATGCGCAGGATTGGCGGGATATTCCTCAAGGGGCTGCTGGCCGTCCTGCCGGCAGTCGTCACCCTTTATCTTCTCTACTG GCTGATCATCACCGCCGAGCGGGCGCTCGGCAGCATCGTCCAGCTTGTCATCCCCGAGACCTGGTACCACCCCGGCCTGG GTGTCGCCCTGGCGGTGGCCGGCATCTTCGCCATCGGCGTGCTGCTCAATTTCTATCTCCTGCGCCGCCTGTGGGAGTGG TTCGAACAGATCCTCCTGCAGCTCCCGGTGGTCAAGACCATCTACGGCGCCGTGCAGGATCTCACCGGGTTCGTCTCCCG TGCCGAAGAGTTGGGTGACCAGGTGGTCACGGTGCCGCTGCCCGGCAGCGACTACCGGGTCCTCGGCGTGGTCACCCGCA GACAGTGGGAAGGCGTGGCCGAGGGGCTGGGCGACGAGCACACCATCGCCGTTTACACCCCGATGAGCTATCAGGTGGGT GGCTACACGCTGCTGGCGCCGGCCTCCGTGGTCGAGCCGGTGGACATGAGTGTCGAGGACGCCATGCGGTTTGCGGTGAC CGCGGGCATGTCGACCCGCAAGAGCGCCTCCCTCGACGAACTGCTCGAGGACTCGGCACACGACCCGGGCAGGGAGGGGT AG
Upstream 100 bases:
>100_bases GTCCGGCGAGCTCGCCCCCAAGGTGAGCTGAGCCCGGAGCGGTCCCCAGTGCCTGGCCGGGGCGCCCTCGCGCCCCGGCG GGTGGGCGGGGAGGATCATC
Downstream 100 bases:
>100_bases GGCATAGGCGATAAGAACAACAATGCTCGCCCGTCTGCGGGGAATGCCCGGGGGCCCACAAGGCCGCCGGGTGCGGCCTG GCCACCCGCCGTGTCGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MRRIGGIFLKGLLAVLPAVVTLYLLYWLIITAERALGSIVQLVIPETWYHPGLGVALAVAGIFAIGVLLNFYLLRRLWEW FEQILLQLPVVKTIYGAVQDLTGFVSRAEELGDQVVTVPLPGSDYRVLGVVTRRQWEGVAEGLGDEHTIAVYTPMSYQVG GYTLLAPASVVEPVDMSVEDAMRFAVTAGMSTRKSASLDELLEDSAHDPGREG
Sequences:
>Translated_213_residues MRRIGGIFLKGLLAVLPAVVTLYLLYWLIITAERALGSIVQLVIPETWYHPGLGVALAVAGIFAIGVLLNFYLLRRLWEW FEQILLQLPVVKTIYGAVQDLTGFVSRAEELGDQVVTVPLPGSDYRVLGVVTRRQWEGVAEGLGDEHTIAVYTPMSYQVG GYTLLAPASVVEPVDMSVEDAMRFAVTAGMSTRKSASLDELLEDSAHDPGREG >Mature_213_residues MRRIGGIFLKGLLAVLPAVVTLYLLYWLIITAERALGSIVQLVIPETWYHPGLGVALAVAGIFAIGVLLNFYLLRRLWEW FEQILLQLPVVKTIYGAVQDLTGFVSRAEELGDQVVTVPLPGSDYRVLGVVTRRQWEGVAEGLGDEHTIAVYTPMSYQVG GYTLLAPASVVEPVDMSVEDAMRFAVTAGMSTRKSASLDELLEDSAHDPGREG
Specific function: Unknown
COG id: COG2928
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23302; Mature: 23302
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRIGGIFLKGLLAVLPAVVTLYLLYWLIITAERALGSIVQLVIPETWYHPGLGVALAVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH GIFAIGVLLNFYLLRRLWEWFEQILLQLPVVKTIYGAVQDLTGFVSRAEELGDQVVTVPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC PGSDYRVLGVVTRRQWEGVAEGLGDEHTIAVYTPMSYQVGGYTLLAPASVVEPVDMSVED CCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEECCHHHHCCCCCCHHH AMRFAVTAGMSTRKSASLDELLEDSAHDPGREG HHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MRRIGGIFLKGLLAVLPAVVTLYLLYWLIITAERALGSIVQLVIPETWYHPGLGVALAVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH GIFAIGVLLNFYLLRRLWEWFEQILLQLPVVKTIYGAVQDLTGFVSRAEELGDQVVTVPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC PGSDYRVLGVVTRRQWEGVAEGLGDEHTIAVYTPMSYQVGGYTLLAPASVVEPVDMSVED CCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEECCHHHHCCCCCCHHH AMRFAVTAGMSTRKSASLDELLEDSAHDPGREG HHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA