| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is maeB [H]
Identifier: 121997820
GI number: 121997820
Start: 1104071
End: 1106365
Strand: Reverse
Name: maeB [H]
Synonym: Hhal_1029
Alternate gene names: 121997820
Gene position: 1106365-1104071 (Counterclockwise)
Preceding gene: 121997821
Following gene: 121997815
Centisome position: 41.31
GC content: 67.36
Gene sequence:
>2295_bases ATGTCCGACGACTTCAAAGAAGCCGCGCTCGAATACCATCGGCAGCCGACCCCCGGGAAGATCGAGGTCATCCCCAGCAA GCCGCTGGCCAACCAGCGTGACCTCGCCCTGGCCTACTCCCCCGGGGTTGCCTCGGCCTGCGAAGCCATCGTCAACGACC CGCGCGAGGCGGCCGCCATGACCGCCCGGGGCAACCTGGTGGCGGTCATCACCAACGGTTCCGCCGTGCTCGGCCTGGGT AACATCGGTCCACTGGCGTCGAAACCGGTGATGGAGGGCAAGGGTGTCCTGTTCAAGAAGTTCGCCGGAATCGATGTCTT CGACATCGAGGTCGACGAGCCGGACGCCGAGCGCTTCGTCGACATCGTCTCCGCTCTGGAGCCGACCTTCGGCGGCATCA ATCTGGAGGACATCAAGGCCCCGGAGTGCTTCGAGATCGAGGAGGCCCTCAAGCGCCGGATGAACATCCCGGTGTTCCAC GATGATCAGCACGGCACCGCCATCATCACTGCTGCGGCTATCCGCAATGGCCTGCGCGTGGTGGGCAAGCGGCTCGAGGA CGTCACCCTGGTCTGCTCCGGCGCCGGTGCCGCGGCCATCGCCTGCCTCGACCTGCTGGTGGCCATGGGGCTGCCCAAGG AGCAGATCACCGTCACCGATCGCAAGGGCGTGGTCTACAAGGGGCGCAAGGAGTACATGGACCCGCGTAAGGAAGGCTAT GCCCGGGAGACGGCCTCCCGCAGTCTGCGCGAGGTGATCGAGGGCGCGGACATCTTCCTCGGGCTGTCGGCACCGGGGGT GCTGAATGCCGAGATGGTCCACCTGATGGCCGATCAGCCGATCATCATGGCGTTGGCCAATCCGGTTCCCGAGATCCTCC CCGAGGAGGTGCGCGAGGCCCGGCCCGATGCGGTGATCGCCACCGGCCGCTCGGATTACCCCAACCAGGTGAACAACGTC CTCTGCTTCCCGTTCATCTTCCGCGGGGCGCTGGATGTGGGCGCCAGCGCCATCAACGAGGCGATGAAGATCGCCGCGGT GGAGGCCATCGCCGACCTGGCTACCGAGGAGTCGTCCGAGGAGGTGGTGGCAGCCTACGGCGGCCGGCCCTGGAGCTTCG GCCCCGAGTACCTGATTCCCAAGCCCTTCGACCCCCGACTGATCAGCCGCGTGGCGCCGGCGGTGGCCCAAGCCGCCATG GAGAGCGGGGTGGCTTGCCGGCCGATCGCGGACTTCGAGGCCTACCGCCTGCAGCTGCAGCAGTACGTGTTCCAGTCCGG GCTGGTCATGAAGCCGATTTTCGAGCGCGCCCGGGAGCAGCCCAAGCGGGTGGTCTACACCGACGGCGAAGAGGAGCGGA TCCTCCGTGCCGTGCAGCTGGTGGTCGACGAACAGCTTGCGCGGCCCATCGTCGTCGGGCGCCGGCGCGTGGTGGAGAAG CGGCTGCGCCAGCTCGGTTTGCGGGTACAGATCGACGAGGATTTCGAGCTGGTCGACCCCGAGGGCGACCCCCGCTACCG CGACTATTGGCAGGCGTACTACCAGCTGATGGCCCGGCGCGGCGTGACGCCGGCCCGGGCGCGGACGGTGGTGCGTACCC GCAACACGGTCATCGGCGCACTGATGGTCCATCTAGGCGACGCCGACGCCCTGGTCGGCGGTATCGAGGGGCGCTATCAG CGGCAGATGCAGCACGTTCAGGACGTTATCGGCCGTCGCCGCGGGGTGCGCAACCTGGCGGCGATGAACGTGCTGATCAT GCCCAAGGGGACCTTCTTCCTGGCGGACACCTACGTCAACCAGGATCCGAACCCCCACGAGATCGCCGAGATGACCTTGT TGGCTGCGGACGAGGTGCGCCGTTTCGGAACGGTGCCGAAGGTGGCGCTGCTCTCGCACTCGAACTTCGGTACCTCGTCG CAGCCCTCGGCGGAGAAGATGCGCCACGCCCTGGAGCTGATCCAGGACCGGGACCCGGCCCTCGAGGTGGAGGGCGAGAT GCACGGCGACGCAGCGATCTCCGAGGAGGTGCGACGGCGCATCTTCCCCGATGCGCAGCTCGAGGGGGAGGCGAACCTGC TGATCATGCCGGGGCTCGACGCCGCCAACATCTCGTTCAACCTGCTCAAGGCGACCACCGACAGCGTCTCTGTCGGGCCG ATCCTGCTCGGGACCGCGAAACCGGCCCACCTGCTCACCCCGTCGTCCACCGTTCGGGCCATCGTCAACCTCACCGCCCT GTCCGTGGTCGAGGCGCAGATGACCGATGCGGTGGAGCCGGAGAGGCATCCGTAG
Upstream 100 bases:
>100_bases TTCCTGGCGCACGCCTATCCGGCGCGGTGACGCCACCACCCTGGCAGCAAGCCTGAAGCTCACCCTATACTGGGCTGATC CAATACCCAAGGGATTTTAT
Downstream 100 bases:
>100_bases CGCCGACGCTAGCAGGCGGAGGTGCAACGAGAAAGGCCCCGGGCCGATAACGGCCCGGGGCCTTTTCTCATCCCCCGTCA GGGTGTCCGCCTGCAGGGCC
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 764; Mature: 763
Protein sequence:
>764_residues MSDDFKEAALEYHRQPTPGKIEVIPSKPLANQRDLALAYSPGVASACEAIVNDPREAAAMTARGNLVAVITNGSAVLGLG NIGPLASKPVMEGKGVLFKKFAGIDVFDIEVDEPDAERFVDIVSALEPTFGGINLEDIKAPECFEIEEALKRRMNIPVFH DDQHGTAIITAAAIRNGLRVVGKRLEDVTLVCSGAGAAAIACLDLLVAMGLPKEQITVTDRKGVVYKGRKEYMDPRKEGY ARETASRSLREVIEGADIFLGLSAPGVLNAEMVHLMADQPIIMALANPVPEILPEEVREARPDAVIATGRSDYPNQVNNV LCFPFIFRGALDVGASAINEAMKIAAVEAIADLATEESSEEVVAAYGGRPWSFGPEYLIPKPFDPRLISRVAPAVAQAAM ESGVACRPIADFEAYRLQLQQYVFQSGLVMKPIFERAREQPKRVVYTDGEEERILRAVQLVVDEQLARPIVVGRRRVVEK RLRQLGLRVQIDEDFELVDPEGDPRYRDYWQAYYQLMARRGVTPARARTVVRTRNTVIGALMVHLGDADALVGGIEGRYQ RQMQHVQDVIGRRRGVRNLAAMNVLIMPKGTFFLADTYVNQDPNPHEIAEMTLLAADEVRRFGTVPKVALLSHSNFGTSS QPSAEKMRHALELIQDRDPALEVEGEMHGDAAISEEVRRRIFPDAQLEGEANLLIMPGLDAANISFNLLKATTDSVSVGP ILLGTAKPAHLLTPSSTVRAIVNLTALSVVEAQMTDAVEPERHP
Sequences:
>Translated_764_residues MSDDFKEAALEYHRQPTPGKIEVIPSKPLANQRDLALAYSPGVASACEAIVNDPREAAAMTARGNLVAVITNGSAVLGLG NIGPLASKPVMEGKGVLFKKFAGIDVFDIEVDEPDAERFVDIVSALEPTFGGINLEDIKAPECFEIEEALKRRMNIPVFH DDQHGTAIITAAAIRNGLRVVGKRLEDVTLVCSGAGAAAIACLDLLVAMGLPKEQITVTDRKGVVYKGRKEYMDPRKEGY ARETASRSLREVIEGADIFLGLSAPGVLNAEMVHLMADQPIIMALANPVPEILPEEVREARPDAVIATGRSDYPNQVNNV LCFPFIFRGALDVGASAINEAMKIAAVEAIADLATEESSEEVVAAYGGRPWSFGPEYLIPKPFDPRLISRVAPAVAQAAM ESGVACRPIADFEAYRLQLQQYVFQSGLVMKPIFERAREQPKRVVYTDGEEERILRAVQLVVDEQLARPIVVGRRRVVEK RLRQLGLRVQIDEDFELVDPEGDPRYRDYWQAYYQLMARRGVTPARARTVVRTRNTVIGALMVHLGDADALVGGIEGRYQ RQMQHVQDVIGRRRGVRNLAAMNVLIMPKGTFFLADTYVNQDPNPHEIAEMTLLAADEVRRFGTVPKVALLSHSNFGTSS QPSAEKMRHALELIQDRDPALEVEGEMHGDAAISEEVRRRIFPDAQLEGEANLLIMPGLDAANISFNLLKATTDSVSVGP ILLGTAKPAHLLTPSSTVRAIVNLTALSVVEAQMTDAVEPERHP >Mature_763_residues SDDFKEAALEYHRQPTPGKIEVIPSKPLANQRDLALAYSPGVASACEAIVNDPREAAAMTARGNLVAVITNGSAVLGLGN IGPLASKPVMEGKGVLFKKFAGIDVFDIEVDEPDAERFVDIVSALEPTFGGINLEDIKAPECFEIEEALKRRMNIPVFHD DQHGTAIITAAAIRNGLRVVGKRLEDVTLVCSGAGAAAIACLDLLVAMGLPKEQITVTDRKGVVYKGRKEYMDPRKEGYA RETASRSLREVIEGADIFLGLSAPGVLNAEMVHLMADQPIIMALANPVPEILPEEVREARPDAVIATGRSDYPNQVNNVL CFPFIFRGALDVGASAINEAMKIAAVEAIADLATEESSEEVVAAYGGRPWSFGPEYLIPKPFDPRLISRVAPAVAQAAME SGVACRPIADFEAYRLQLQQYVFQSGLVMKPIFERAREQPKRVVYTDGEEERILRAVQLVVDEQLARPIVVGRRRVVEKR LRQLGLRVQIDEDFELVDPEGDPRYRDYWQAYYQLMARRGVTPARARTVVRTRNTVIGALMVHLGDADALVGGIEGRYQR QMQHVQDVIGRRRGVRNLAAMNVLIMPKGTFFLADTYVNQDPNPHEIAEMTLLAADEVRRFGTVPKVALLSHSNFGTSSQ PSAEKMRHALELIQDRDPALEVEGEMHGDAAISEEVRRRIFPDAQLEGEANLLIMPGLDAANISFNLLKATTDSVSVGPI LLGTAKPAHLLTPSSTVRAIVNLTALSVVEAQMTDAVEPERHP
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=406, Percent_Identity=24.6305418719212, Blast_Score=90, Evalue=1e-17, Organism=Homo sapiens, GI62420882, Length=403, Percent_Identity=25.5583126550869, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI62420880, Length=403, Percent_Identity=25.5583126550869, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI239049447, Length=403, Percent_Identity=25.5583126550869, Blast_Score=81, Evalue=4e-15, Organism=Escherichia coli, GI1788806, Length=755, Percent_Identity=62.1192052980132, Blast_Score=963, Evalue=0.0, Organism=Escherichia coli, GI1788800, Length=331, Percent_Identity=30.5135951661631, Blast_Score=139, Evalue=8e-34, Organism=Escherichia coli, GI1788635, Length=320, Percent_Identity=27.1875, Blast_Score=135, Evalue=8e-33, Organism=Saccharomyces cerevisiae, GI6322823, Length=268, Percent_Identity=27.9850746268657, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI281362674, Length=396, Percent_Identity=26.2626262626263, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI281362672, Length=396, Percent_Identity=26.2626262626263, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI21356279, Length=396, Percent_Identity=26.2626262626263, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24646388, Length=402, Percent_Identity=27.8606965174129, Blast_Score=87, Evalue=6e-17, Organism=Drosophila melanogaster, GI24646386, Length=402, Percent_Identity=27.363184079602, Blast_Score=86, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 83543; Mature: 83412
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDFKEAALEYHRQPTPGKIEVIPSKPLANQRDLALAYSPGVASACEAIVNDPREAAAM CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHE TARGNLVAVITNGSAVLGLGNIGPLASKPVMEGKGVLFKKFAGIDVFDIEVDEPDAERFV EECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEHHCCCEEEEEEECCCCHHHHH DIVSALEPTFGGINLEDIKAPECFEIEEALKRRMNIPVFHDDQHGTAIITAAAIRNGLRV HHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHH VGKRLEDVTLVCSGAGAAAIACLDLLVAMGLPKEQITVTDRKGVVYKGRKEYMDPRKEGY HHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECCCCCEECCHHHHCCCHHHCH ARETASRSLREVIEGADIFLGLSAPGVLNAEMVHLMADQPIIMALANPVPEILPEEVREA HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCHHCCHHHHHHC RPDAVIATGRSDYPNQVNNVLCFPFIFRGALDVGASAINEAMKIAAVEAIADLATEESSE CCCEEEECCCCCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EVVAAYGGRPWSFGPEYLIPKPFDPRLISRVAPAVAQAAMESGVACRPIADFEAYRLQLQ CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH QYVFQSGLVMKPIFERAREQPKRVVYTDGEEERILRAVQLVVDEQLARPIVVGRRRVVEK HHHHHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH RLRQLGLRVQIDEDFELVDPEGDPRYRDYWQAYYQLMARRGVTPARARTVVRTRNTVIGA HHHHCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LMVHLGDADALVGGIEGRYQRQMQHVQDVIGRRRGVRNLAAMNVLIMPKGTFFLADTYVN HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCEEEEECCCCEEEEEECCC QDPNPHEIAEMTLLAADEVRRFGTVPKVALLSHSNFGTSSQPSAEKMRHALELIQDRDPA CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC LEVEGEMHGDAAISEEVRRRIFPDAQLEGEANLLIMPGLDAANISFNLLKATTDSVSVGP EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCEECE ILLGTAKPAHLLTPSSTVRAIVNLTALSVVEAQMTDAVEPERHP EEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SDDFKEAALEYHRQPTPGKIEVIPSKPLANQRDLALAYSPGVASACEAIVNDPREAAAM CCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHE TARGNLVAVITNGSAVLGLGNIGPLASKPVMEGKGVLFKKFAGIDVFDIEVDEPDAERFV EECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEHHCCCEEEEEEECCCCHHHHH DIVSALEPTFGGINLEDIKAPECFEIEEALKRRMNIPVFHDDQHGTAIITAAAIRNGLRV HHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHH VGKRLEDVTLVCSGAGAAAIACLDLLVAMGLPKEQITVTDRKGVVYKGRKEYMDPRKEGY HHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECCCCCEECCHHHHCCCHHHCH ARETASRSLREVIEGADIFLGLSAPGVLNAEMVHLMADQPIIMALANPVPEILPEEVREA HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCHHCCHHHHHHC RPDAVIATGRSDYPNQVNNVLCFPFIFRGALDVGASAINEAMKIAAVEAIADLATEESSE CCCEEEECCCCCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EVVAAYGGRPWSFGPEYLIPKPFDPRLISRVAPAVAQAAMESGVACRPIADFEAYRLQLQ CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH QYVFQSGLVMKPIFERAREQPKRVVYTDGEEERILRAVQLVVDEQLARPIVVGRRRVVEK HHHHHCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH RLRQLGLRVQIDEDFELVDPEGDPRYRDYWQAYYQLMARRGVTPARARTVVRTRNTVIGA HHHHCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LMVHLGDADALVGGIEGRYQRQMQHVQDVIGRRRGVRNLAAMNVLIMPKGTFFLADTYVN HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCEEEEECCCCEEEEEECCC QDPNPHEIAEMTLLAADEVRRFGTVPKVALLSHSNFGTSSQPSAEKMRHALELIQDRDPA CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC LEVEGEMHGDAAISEEVRRRIFPDAQLEGEANLLIMPGLDAANISFNLLKATTDSVSVGP EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCEECE ILLGTAKPAHLLTPSSTVRAIVNLTALSVVEAQMTDAVEPERHP EEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]