| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121997591
Identifier: 121997591
GI number: 121997591
Start: 882113
End: 882991
Strand: Reverse
Name: 121997591
Synonym: Hhal_0800
Alternate gene names: NA
Gene position: 882991-882113 (Counterclockwise)
Preceding gene: 121997592
Following gene: 121997587
Centisome position: 32.97
GC content: 67.35
Gene sequence:
>879_bases GTGCAGTACCTCCAAGCCCGTATTCAGTCCGAAACCCACCAGGACCCGGCTATTGCCCATGCGCAGGGCGAAGACGGTGC CCTGTGGCTGACCGACAGCCGCGTGCTGACCCCGGCAGAGCTGGCGGAGTGGCTGCCGCGCTGGGAGGCCGAGTTGCCCG TACGCGGCGAGTTGTTGGCTTCTCGGCGGCGCCACGATGTCTATCGTCTGGATACGGAGGAGTTTGGTCCGCTGGTGCTC AAGTACACCAACCCCGGCAAGACCAAGCGACGTTCGGCGGTGGCGGCCTGGCTAACCGGGCGACGCCTTGACCGGGCGCT GCCGGGTGTCGTTGCTCAGCCGCTCGGCGCAGTGGATCGCTACCAAGGGGATGCTGTCGTCGCCGCCTGCCTCATCTGCC GCTACGTCGACGCCCAGCCGCTGCCGGAACCGGACGAGGGTGCGGAGCTGGGCGAGCTGGCGGATCGGGTGGGGCGCTTC CAGGCCCGGCTCCACGCCAGCGGCGTCTATCTACAGGATTGCCGAATGGGGAATATGCTGGCCGTTGCCAGCGTTGCGGA AGGGGGGGAGGAGGGCGCCGAGACAGAGGGGCTGACCATCGTCGACCTGGAGGCGCTGGCCGAGGGGCGGCCGAGCTGCT TCAACGCCGCCCGTCTGCTCCTCAAGCTGCGACTTTCGCACGAGGACTTCGCCCGCGTCTGGGCAGCCTACGTGGAGAAG CGGGGTGCGGACCTGGGTCATGCGGAGCGGTTCGTGCTGTGGTGGATTTATTTGCCGTTGCGTCGGGTGCGCCATAAGGG GCTGCGGTTTTATCGTGGCTGCCTGCGGCCAATGTTCGGGCTCTCGAGGCATGGCACGGGATCTAGAACCAGCGCCTAG
Upstream 100 bases:
>100_bases GCGGCCTACACCCTGGGCGTGGCGGGCGATGCCGCCTAACTCGAAAAGCCGAGCGTGATAAAGTACGGGCCTTCGTTCCA CGTTGCTAGGTTCGACGTCC
Downstream 100 bases:
>100_bases CGCGCTATGCACGATCCATCGTCCAAATCAAAATCGTATTCGCATAATACCCGGTGTTCTCGTGCTCGTACCGTCTCTAG CCTGTTTGGCGATACCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MQYLQARIQSETHQDPAIAHAQGEDGALWLTDSRVLTPAELAEWLPRWEAELPVRGELLASRRRHDVYRLDTEEFGPLVL KYTNPGKTKRRSAVAAWLTGRRLDRALPGVVAQPLGAVDRYQGDAVVAACLICRYVDAQPLPEPDEGAELGELADRVGRF QARLHASGVYLQDCRMGNMLAVASVAEGGEEGAETEGLTIVDLEALAEGRPSCFNAARLLLKLRLSHEDFARVWAAYVEK RGADLGHAERFVLWWIYLPLRRVRHKGLRFYRGCLRPMFGLSRHGTGSRTSA
Sequences:
>Translated_292_residues MQYLQARIQSETHQDPAIAHAQGEDGALWLTDSRVLTPAELAEWLPRWEAELPVRGELLASRRRHDVYRLDTEEFGPLVL KYTNPGKTKRRSAVAAWLTGRRLDRALPGVVAQPLGAVDRYQGDAVVAACLICRYVDAQPLPEPDEGAELGELADRVGRF QARLHASGVYLQDCRMGNMLAVASVAEGGEEGAETEGLTIVDLEALAEGRPSCFNAARLLLKLRLSHEDFARVWAAYVEK RGADLGHAERFVLWWIYLPLRRVRHKGLRFYRGCLRPMFGLSRHGTGSRTSA >Mature_292_residues MQYLQARIQSETHQDPAIAHAQGEDGALWLTDSRVLTPAELAEWLPRWEAELPVRGELLASRRRHDVYRLDTEEFGPLVL KYTNPGKTKRRSAVAAWLTGRRLDRALPGVVAQPLGAVDRYQGDAVVAACLICRYVDAQPLPEPDEGAELGELADRVGRF QARLHASGVYLQDCRMGNMLAVASVAEGGEEGAETEGLTIVDLEALAEGRPSCFNAARLLLKLRLSHEDFARVWAAYVEK RGADLGHAERFVLWWIYLPLRRVRHKGLRFYRGCLRPMFGLSRHGTGSRTSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32593; Mature: 32593
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYLQARIQSETHQDPAIAHAQGEDGALWLTDSRVLTPAELAEWLPRWEAELPVRGELLA CCHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHH SRRRHDVYRLDTEEFGPLVLKYTNPGKTKRRSAVAAWLTGRRLDRALPGVVAQPLGAVDR HHHHCCEEEECHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH YQGDAVVAACLICRYVDAQPLPEPDEGAELGELADRVGRFQARLHASGVYLQDCRMGNML CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCH AVASVAEGGEEGAETEGLTIVDLEALAEGRPSCFNAARLLLKLRLSHEDFARVWAAYVEK HHHHHHCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RGADLGHAERFVLWWIYLPLRRVRHKGLRFYRGCLRPMFGLSRHGTGSRTSA HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MQYLQARIQSETHQDPAIAHAQGEDGALWLTDSRVLTPAELAEWLPRWEAELPVRGELLA CCHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHH SRRRHDVYRLDTEEFGPLVLKYTNPGKTKRRSAVAAWLTGRRLDRALPGVVAQPLGAVDR HHHHCCEEEECHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH YQGDAVVAACLICRYVDAQPLPEPDEGAELGELADRVGRFQARLHASGVYLQDCRMGNML CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCH AVASVAEGGEEGAETEGLTIVDLEALAEGRPSCFNAARLLLKLRLSHEDFARVWAAYVEK HHHHHHCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RGADLGHAERFVLWWIYLPLRRVRHKGLRFYRGCLRPMFGLSRHGTGSRTSA HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA