| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997536
Identifier: 121997536
GI number: 121997536
Start: 828261
End: 829448
Strand: Reverse
Name: 121997536
Synonym: Hhal_0740
Alternate gene names: NA
Gene position: 829448-828261 (Counterclockwise)
Preceding gene: 121997537
Following gene: 121997532
Centisome position: 30.97
GC content: 71.46
Gene sequence:
>1188_bases ATGAGCTGGACGACCCCCGCCGATCTGCGCCAGCAGGTGCAGAAGCGCTGGGATCGGGGCGAACTGCTCGCTGCGCGGGT GACCGGTGCCGCGCTCTTCCCGCTGAGCCTGCGGCTCCGCCGTCCGGGCTCCCGCGAACTGGCCGAGGACTTCGAGGGCG TTCGGCAGTGGGTGCAGCGCCTCGCCGCCGCCGACCGGGCGCAGCGCGGTTACGGTTTCGAGATCCAGTGGCGCACCGTC CGTCACCGCGTCCACGGCCGCAATGAGCTACCGGCCGGCGCCGTTGTACCGACCGAGGCCGACGCCCTGCGCCTGATCGG CCGCCGCCAGGAGGCAGAGCGTTTCGACGCCCTCTGCCGACAGGGCCTGGCGGCGTTCCCGGAGCTGGCCGACTGGCTGG CCCGCCGGCCGCTGACCGTGCTGGAGCACGCCGAGGCGTGGGATCGGATCCTCGCGGTGCTGCGCTACTTCCGGGACCAT CCGCGCCCCGGCGTCTACCTCCGCCAGCTCGATATCCCGGGAGTGGATACGAAGTTCATCGAGGCCCGGCGCAAGCTGCT CATGGAGCTGCTCGATGCAGTCCTGCCGGCCGAGGCCATCCAGGCCGAGGCCACCGGCGCCCGGCGTTTCGCCGAACGCT ACGGGTTGTGCCAGGAGCCGCCGCTGGTGCGCTTTCGGGTGCTCGATCCGGCGTGCGCCATCGCCGGGCTCACCGATTTG ACCATCCCCGCCGAGCAGTTCCAGGCACTGGCGCCGGCGGTGGAGACGGTCTTCATCACCGAGAACAAGACCAACGGCCT CGCCTTCCCGGCGCACCCCCGCGCGCTGGTGGTGTTCGGTCTCGGCTACGGCCTCGAGCGCCTGGCCGAGGTGCCCTGGC TGCACCGCGTGCGTGTCGCCTACTGGGGGGATATCGACACCCACGGCTTCGCCATCCTCAACCGGCTGCGTCGGGCGCTG CCGCAGGCCGAGTCGCTCCTCATGGACCGGGCCACGCTGGAAGCGCACCGCCCCCTGTGGACCGCGGAGCCGAGCGAGCA CCGCTTCCTCGGCGATCTGGCGCGTCTGACCGAAGCCGAGGCTGCGCTGTTCGAGGATCTGCGCCAGGATCGCATCGGCG AGCGCGTCCGCCTTGAGCAGGAGCGCATCGGTTTTCGCTGGGTCGTGGAGCGTACGCAGGGGCTGTGA
Upstream 100 bases:
>100_bases GCTTCGTCCACGGCGAAGGCGGGTGCTTCTCGCTGCTGCGCCATCTGAGCATCGAGGCGTACCACGCCGAAAAGGCCATC CGGCGCGCGGCAACCAGCGG
Downstream 100 bases:
>100_bases TGGCCGGAGGCCGGGTCAGCGCAGCCCTTCGAGCATCTGCACCTGCATCAGCTCCCCCAGTCGGTTGAGGCGTTCCACCG GGATCCCTTCCAGCTGAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MSWTTPADLRQQVQKRWDRGELLAARVTGAALFPLSLRLRRPGSRELAEDFEGVRQWVQRLAAADRAQRGYGFEIQWRTV RHRVHGRNELPAGAVVPTEADALRLIGRRQEAERFDALCRQGLAAFPELADWLARRPLTVLEHAEAWDRILAVLRYFRDH PRPGVYLRQLDIPGVDTKFIEARRKLLMELLDAVLPAEAIQAEATGARRFAERYGLCQEPPLVRFRVLDPACAIAGLTDL TIPAEQFQALAPAVETVFITENKTNGLAFPAHPRALVVFGLGYGLERLAEVPWLHRVRVAYWGDIDTHGFAILNRLRRAL PQAESLLMDRATLEAHRPLWTAEPSEHRFLGDLARLTEAEAALFEDLRQDRIGERVRLEQERIGFRWVVERTQGL
Sequences:
>Translated_395_residues MSWTTPADLRQQVQKRWDRGELLAARVTGAALFPLSLRLRRPGSRELAEDFEGVRQWVQRLAAADRAQRGYGFEIQWRTV RHRVHGRNELPAGAVVPTEADALRLIGRRQEAERFDALCRQGLAAFPELADWLARRPLTVLEHAEAWDRILAVLRYFRDH PRPGVYLRQLDIPGVDTKFIEARRKLLMELLDAVLPAEAIQAEATGARRFAERYGLCQEPPLVRFRVLDPACAIAGLTDL TIPAEQFQALAPAVETVFITENKTNGLAFPAHPRALVVFGLGYGLERLAEVPWLHRVRVAYWGDIDTHGFAILNRLRRAL PQAESLLMDRATLEAHRPLWTAEPSEHRFLGDLARLTEAEAALFEDLRQDRIGERVRLEQERIGFRWVVERTQGL >Mature_394_residues SWTTPADLRQQVQKRWDRGELLAARVTGAALFPLSLRLRRPGSRELAEDFEGVRQWVQRLAAADRAQRGYGFEIQWRTVR HRVHGRNELPAGAVVPTEADALRLIGRRQEAERFDALCRQGLAAFPELADWLARRPLTVLEHAEAWDRILAVLRYFRDHP RPGVYLRQLDIPGVDTKFIEARRKLLMELLDAVLPAEAIQAEATGARRFAERYGLCQEPPLVRFRVLDPACAIAGLTDLT IPAEQFQALAPAVETVFITENKTNGLAFPAHPRALVVFGLGYGLERLAEVPWLHRVRVAYWGDIDTHGFAILNRLRRALP QAESLLMDRATLEAHRPLWTAEPSEHRFLGDLARLTEAEAALFEDLRQDRIGERVRLEQERIGFRWVVERTQGL
Specific function: Unknown
COG id: COG4924
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45076; Mature: 44945
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWTTPADLRQQVQKRWDRGELLAARVTGAALFPLSLRLRRPGSRELAEDFEGVRQWVQR CCCCCHHHHHHHHHHHCCCCCEEHHHHCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHH LAAADRAQRGYGFEIQWRTVRHRVHGRNELPAGAVVPTEADALRLIGRRQEAERFDALCR HHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QGLAAFPELADWLARRPLTVLEHAEAWDRILAVLRYFRDHPRPGVYLRQLDIPGVDTKFI HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH EARRKLLMELLDAVLPAEAIQAEATGARRFAERYGLCQEPPLVRFRVLDPACAIAGLTDL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHCCHHC TIPAEQFQALAPAVETVFITENKTNGLAFPAHPRALVVFGLGYGLERLAEVPWLHRVRVA CCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHH YWGDIDTHGFAILNRLRRALPQAESLLMDRATLEAHRPLWTAEPSEHRFLGDLARLTEAE EECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH AALFEDLRQDRIGERVRLEQERIGFRWVVERTQGL HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCC >Mature Secondary Structure SWTTPADLRQQVQKRWDRGELLAARVTGAALFPLSLRLRRPGSRELAEDFEGVRQWVQR CCCCHHHHHHHHHHHCCCCCEEHHHHCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHH LAAADRAQRGYGFEIQWRTVRHRVHGRNELPAGAVVPTEADALRLIGRRQEAERFDALCR HHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QGLAAFPELADWLARRPLTVLEHAEAWDRILAVLRYFRDHPRPGVYLRQLDIPGVDTKFI HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH EARRKLLMELLDAVLPAEAIQAEATGARRFAERYGLCQEPPLVRFRVLDPACAIAGLTDL HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHCCHHC TIPAEQFQALAPAVETVFITENKTNGLAFPAHPRALVVFGLGYGLERLAEVPWLHRVRVA CCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHH YWGDIDTHGFAILNRLRRALPQAESLLMDRATLEAHRPLWTAEPSEHRFLGDLARLTEAE EECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH AALFEDLRQDRIGERVRLEQERIGFRWVVERTQGL HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA