| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997494
Identifier: 121997494
GI number: 121997494
Start: 777802
End: 780720
Strand: Reverse
Name: 121997494
Synonym: Hhal_0697
Alternate gene names: NA
Gene position: 780720-777802 (Counterclockwise)
Preceding gene: 121997495
Following gene: 121997493
Centisome position: 29.15
GC content: 66.5
Gene sequence:
>2919_bases GTGGGTGCGACTGGGCGGTCTGTTGCGGTCGCGGTTTGGCTCCTGGCCGCGGCGGGGGCGTTCTGGTCGCCCAGCGCGCC TGCCCCGCTTTCTGTGGAGAGCCTCCAGGAAGAGGATGATGGCGAGGGGGTGGAGGATATGGTGCTGCGCGTGGAGCTGG AAGGCTACCCCCTCTCCGAGAGCGAGTATATGCTCCAGCGCAAAGGGGAGATCTACTACCCATTGGGCCAGCTCGCCCGC CATCTGGAGCTGGCGGTCGAGGTCGACCCGCTTGAGGGGCAGGTCTCCGGCTGGGTCCTCGATCCGGACCGGACGGTCTC CTTCGATACCGCCAGCGGCATGGGCGAGGTCGGCGACCGCCCGCTGATCCTTGAGGAAGAGGATTGGATCCAAGAGCACG ATGACATCTACTTCCGTGAGGATGCCATCCAGGAGTTCCTGCCCGTTGGCTTCGAATATCGCCCGCGCCGCGCTGAGGTC CACATGCGTGCGGACGAGGAATTGCCGATCCTTAGCCGTCTGGAGCGCGAGGCCCGGTGGGCACGACTGACCGATGACGG GGCGGGTATCGGCGGTGAGGAGTGGCTGCCCCGTGAACCGCTGCCGGCCCGTTTCATGACCCGTCCTGCATGGTCCCTGA GCCTCAATCACCAGCAAAGCGGGAACGGTAGCAGCACCAGCGGTAATCTCGCAGGCGCTGGAGATCTCCTCTGGCATGAG GCGGAGTGGCGGTTACAGGCGAATGACACCGACGGAATCCGGCGCTTCGACGGGACCCTCGGGCAGCAGGTCGGCCACCC GGCCCTGGAGCGCTACGAGCTGGGGCGGGTGCGCGCGCCCCGGTACGACCTGATCCGGCGTGGCGGCTCCGGGATGGGGG TGACCCTGACGAACCGACCGGAGGGTATGGCGCGTACCACGTTTACCGATCAGTCCATCGAGGTGGAGGTTCCCGAGGGC TGGGACGTCGAGCTCTATCGCGACGGCGATCTGGTCGACTTTGCACACGATGTGGACACGGATCGCCACGAGTTCGAGGA CATTGACGCCCGGCCGGGCACCAACCCTTACACCATTGAGTTCTACGGACCCCACGGCGAGCGCGAGACCATCTCGCGGA CGATTGAGATCGGCCCGGGGCTGCTGCCGCCGGGCATGGTGCACTACAGCCTGGATGCCAGCCGAGAGGGGGTCAGTCTC TATGAGCACCAGCCGCGCGATGACCAGGACCGGCGCGCGGCGGCGCGGATGGACGTCGGGGTGACCGAGACCCTGACGGT CGGCGGCGACCTCCACTACATGGAGCCGGATGACGAGGAGGACGAGCTGACGCGCCGAGAGCTGGTCGGGGCGGACGCCT CGTTCAGTGCGTTCGGGGTTTGGGGCCGTCTTCGCGGTGCCTTCGAGAATGACCAAGGCCGGGCTTGGCAGCTCGCGCTG GAGCGCGGTCTGGGCGCGTGGAGCCTGGACTACGAGTACACCCTGGTGGATGGCCTGGAGACCGACGAGCTGCGTAGCCG CGTCAGCGGTGACTTGCGTCACGGCCACGAGTTGCAAGTGCGCGGCTCTTTGGGGCCGCTGCGCACCCGTCTGCGCTACG AGCATCAGGAGTCCGCGGACGGCGAGTCGACTTGGCAACGCCTGCGCACCCGCGAAAACGTGAGCATCGGCGGTCAGCGG CTCCGGCATTCGCTGACCGTGAGCCAGGCGGATGACGGCGACCCTTCCGCGCAGGGCAGCCTGCAGACACGCTGGGGGCG TTATCGGGAGGGGCGGCTGAACCTCGGTGTGAGCTATGGCCTGGCGCCCGAGGCGGAGCTGGATAGCGCCAACGCCGAGT ACAGTCAGAGCCTTCATGACAACTGGCGGGGCAGTGCCCAGGTGCGCGGCAGCTTCAATGACCGTCCTCATAACCTCCGT CTGGGCATTTCCCGTACTGCTCGCGAGTACTGGCGCTTCTCGGGGCAAGGTCAGGTGGATACGGGGGGTCGGTGGCAGGT GTCGGTCGGCCTGGATGTGGGAGGGCTGCCCCATCCTGCCGGGGGGTGGTACCCGGATCCCGAGGCCGGGCGCGGCTACG ATCACGGGGCGGTGATGGCAAGGGTTCATCAGGATGGCGAGCCCGTGGAGGGGGTCGATGTCTGTGCAGGCCGCAGCTGC GGGGGCACCGATGAGAACGGGGAGGCCTGGGCCGCCCGTCTGGATCCCCACGATCCGGTCAACGTGGAGGTGGATGTGGG GTCGATCGACAATCCCTTCGTCCAACCTGCAACCCGGGGGGTAAGCTTCGAGCCGCGCCCGGGTCGGGTACTCCCCCTGG ATTTCGAGCTGCACCTCACGGGCGAGGTGGATGGCGTGGTTCGTCGCCAGCGTGGCACGGCAGAGCCATCGGAGGTCTCC GGTTTCGAGATGGAGGCGGTGGATACCGAAACCGGGGAGGTGGTCCAGACGGATCGCAGTGTCTTCGATGGTCTCTTCAT CCTGGATCAGCTGCCGCCGGGAGGGTATCTGGTGCGCGCTTCGGAGGAGCAGGCAGAGCGCCTGGATGTCCCGCAGACCG CCACGGCGCAGCGCATCAGCGTTGAGGGGGATGGTGATCTGGTGAGTCATCAGGATCTCACGATCCATGACGGTGGTGAG ATCGTCCGGGTCGCTTCGCCGGCAGAGGCGGTCGAGCAGATCACCTTCAGCTACGACTCGAGCCACACCCTCCGCGATCA CCTGGCGCAACTCCTTGATCGCCTGGGTGCGGAGCAAGTCGAAGGTGGCCTGGAGTCGCTCTACGAGGAGGTGGTGATCC TCAACGGCGAGGTCGAAGACGGTGATCGTGTGATGGTCCCGGCGGATCGTTCGCCGCTGGACGAGATCACCCACTGGCAG CATCAGGAAGAATTGGAACTGGCGGAAGAGGGTGACTGA
Upstream 100 bases:
>100_bases CGGGCCTTCGAGGATGACGAGGAGGGCTTTGGCGAGAGCGGTGGTCACGTGAAGGCGGAGCGCACCGTCACCCTCGAGTA AGTCGGTGAGATGGTCTCGC
Downstream 100 bases:
>100_bases TGTCGGTTGCAGGCTGCTCTTGCAGCGTGTTTTGAGGAGGGCCTTATGGGGGCGGTCAGTTCAGCCAGGGAGTGGGGCAC GGATCGCGCGACAGGCGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 972; Mature: 971
Protein sequence:
>972_residues MGATGRSVAVAVWLLAAAGAFWSPSAPAPLSVESLQEEDDGEGVEDMVLRVELEGYPLSESEYMLQRKGEIYYPLGQLAR HLELAVEVDPLEGQVSGWVLDPDRTVSFDTASGMGEVGDRPLILEEEDWIQEHDDIYFREDAIQEFLPVGFEYRPRRAEV HMRADEELPILSRLEREARWARLTDDGAGIGGEEWLPREPLPARFMTRPAWSLSLNHQQSGNGSSTSGNLAGAGDLLWHE AEWRLQANDTDGIRRFDGTLGQQVGHPALERYELGRVRAPRYDLIRRGGSGMGVTLTNRPEGMARTTFTDQSIEVEVPEG WDVELYRDGDLVDFAHDVDTDRHEFEDIDARPGTNPYTIEFYGPHGERETISRTIEIGPGLLPPGMVHYSLDASREGVSL YEHQPRDDQDRRAAARMDVGVTETLTVGGDLHYMEPDDEEDELTRRELVGADASFSAFGVWGRLRGAFENDQGRAWQLAL ERGLGAWSLDYEYTLVDGLETDELRSRVSGDLRHGHELQVRGSLGPLRTRLRYEHQESADGESTWQRLRTRENVSIGGQR LRHSLTVSQADDGDPSAQGSLQTRWGRYREGRLNLGVSYGLAPEAELDSANAEYSQSLHDNWRGSAQVRGSFNDRPHNLR LGISRTAREYWRFSGQGQVDTGGRWQVSVGLDVGGLPHPAGGWYPDPEAGRGYDHGAVMARVHQDGEPVEGVDVCAGRSC GGTDENGEAWAARLDPHDPVNVEVDVGSIDNPFVQPATRGVSFEPRPGRVLPLDFELHLTGEVDGVVRRQRGTAEPSEVS GFEMEAVDTETGEVVQTDRSVFDGLFILDQLPPGGYLVRASEEQAERLDVPQTATAQRISVEGDGDLVSHQDLTIHDGGE IVRVASPAEAVEQITFSYDSSHTLRDHLAQLLDRLGAEQVEGGLESLYEEVVILNGEVEDGDRVMVPADRSPLDEITHWQ HQEELELAEEGD
Sequences:
>Translated_972_residues MGATGRSVAVAVWLLAAAGAFWSPSAPAPLSVESLQEEDDGEGVEDMVLRVELEGYPLSESEYMLQRKGEIYYPLGQLAR HLELAVEVDPLEGQVSGWVLDPDRTVSFDTASGMGEVGDRPLILEEEDWIQEHDDIYFREDAIQEFLPVGFEYRPRRAEV HMRADEELPILSRLEREARWARLTDDGAGIGGEEWLPREPLPARFMTRPAWSLSLNHQQSGNGSSTSGNLAGAGDLLWHE AEWRLQANDTDGIRRFDGTLGQQVGHPALERYELGRVRAPRYDLIRRGGSGMGVTLTNRPEGMARTTFTDQSIEVEVPEG WDVELYRDGDLVDFAHDVDTDRHEFEDIDARPGTNPYTIEFYGPHGERETISRTIEIGPGLLPPGMVHYSLDASREGVSL YEHQPRDDQDRRAAARMDVGVTETLTVGGDLHYMEPDDEEDELTRRELVGADASFSAFGVWGRLRGAFENDQGRAWQLAL ERGLGAWSLDYEYTLVDGLETDELRSRVSGDLRHGHELQVRGSLGPLRTRLRYEHQESADGESTWQRLRTRENVSIGGQR LRHSLTVSQADDGDPSAQGSLQTRWGRYREGRLNLGVSYGLAPEAELDSANAEYSQSLHDNWRGSAQVRGSFNDRPHNLR LGISRTAREYWRFSGQGQVDTGGRWQVSVGLDVGGLPHPAGGWYPDPEAGRGYDHGAVMARVHQDGEPVEGVDVCAGRSC GGTDENGEAWAARLDPHDPVNVEVDVGSIDNPFVQPATRGVSFEPRPGRVLPLDFELHLTGEVDGVVRRQRGTAEPSEVS GFEMEAVDTETGEVVQTDRSVFDGLFILDQLPPGGYLVRASEEQAERLDVPQTATAQRISVEGDGDLVSHQDLTIHDGGE IVRVASPAEAVEQITFSYDSSHTLRDHLAQLLDRLGAEQVEGGLESLYEEVVILNGEVEDGDRVMVPADRSPLDEITHWQ HQEELELAEEGD >Mature_971_residues GATGRSVAVAVWLLAAAGAFWSPSAPAPLSVESLQEEDDGEGVEDMVLRVELEGYPLSESEYMLQRKGEIYYPLGQLARH LELAVEVDPLEGQVSGWVLDPDRTVSFDTASGMGEVGDRPLILEEEDWIQEHDDIYFREDAIQEFLPVGFEYRPRRAEVH MRADEELPILSRLEREARWARLTDDGAGIGGEEWLPREPLPARFMTRPAWSLSLNHQQSGNGSSTSGNLAGAGDLLWHEA EWRLQANDTDGIRRFDGTLGQQVGHPALERYELGRVRAPRYDLIRRGGSGMGVTLTNRPEGMARTTFTDQSIEVEVPEGW DVELYRDGDLVDFAHDVDTDRHEFEDIDARPGTNPYTIEFYGPHGERETISRTIEIGPGLLPPGMVHYSLDASREGVSLY EHQPRDDQDRRAAARMDVGVTETLTVGGDLHYMEPDDEEDELTRRELVGADASFSAFGVWGRLRGAFENDQGRAWQLALE RGLGAWSLDYEYTLVDGLETDELRSRVSGDLRHGHELQVRGSLGPLRTRLRYEHQESADGESTWQRLRTRENVSIGGQRL RHSLTVSQADDGDPSAQGSLQTRWGRYREGRLNLGVSYGLAPEAELDSANAEYSQSLHDNWRGSAQVRGSFNDRPHNLRL GISRTAREYWRFSGQGQVDTGGRWQVSVGLDVGGLPHPAGGWYPDPEAGRGYDHGAVMARVHQDGEPVEGVDVCAGRSCG GTDENGEAWAARLDPHDPVNVEVDVGSIDNPFVQPATRGVSFEPRPGRVLPLDFELHLTGEVDGVVRRQRGTAEPSEVSG FEMEAVDTETGEVVQTDRSVFDGLFILDQLPPGGYLVRASEEQAERLDVPQTATAQRISVEGDGDLVSHQDLTIHDGGEI VRVASPAEAVEQITFSYDSSHTLRDHLAQLLDRLGAEQVEGGLESLYEEVVILNGEVEDGDRVMVPADRSPLDEITHWQH QEELELAEEGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 107804; Mature: 107673
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATGRSVAVAVWLLAAAGAFWSPSAPAPLSVESLQEEDDGEGVEDMVLRVELEGYPLSE CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHEEEEEEECCCCCCC SEYMLQRKGEIYYPLGQLARHLELAVEVDPLEGQVSGWVLDPDRTVSFDTASGMGEVGDR HHHHHHHCCCEEECHHHHHHHEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCC PLILEEEDWIQEHDDIYFREDAIQEFLPVGFEYRPRRAEVHMRADEELPILSRLEREARW CEEECCHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH ARLTDDGAGIGGEEWLPREPLPARFMTRPAWSLSLNHQQSGNGSSTSGNLAGAGDLLWHE EEECCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEC AEWRLQANDTDGIRRFDGTLGQQVGHPALERYELGRVRAPRYDLIRRGGSGMGVTLTNRP CEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHCCCCCCEEEECCCC EGMARTTFTDQSIEVEVPEGWDVELYRDGDLVDFAHDVDTDRHEFEDIDARPGTNPYTIE CCCEEEEECCCEEEEECCCCCCEEEEECCCEEEHHHHCCCCHHHHHCCCCCCCCCCEEEE FYGPHGERETISRTIEIGPGLLPPGMVHYSLDASREGVSLYEHQPRDDQDRRAAARMDVG EECCCCCHHHHHEEEECCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHCCC VTETLTVGGDLHYMEPDDEEDELTRRELVGADASFSAFGVWGRLRGAFENDQGRAWQLAL CEEEEEECCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEH ERGLGAWSLDYEYTLVDGLETDELRSRVSGDLRHGHELQVRGSLGPLRTRLRYEHQESAD HHCCCEEEECEEEEEECCCCHHHHHHHHCCHHCCCCEEEEECCCCHHHHHHHHCCCCCCC GESTWQRLRTRENVSIGGQRLRHSLTVSQADDGDPSAQGSLQTRWGRYREGRLNLGVSYG HHHHHHHHHHCCCCCCCHHHHHHEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEC LAPEAELDSANAEYSQSLHDNWRGSAQVRGSFNDRPHNLRLGISRTAREYWRFSGQGQVD CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCC TGGRWQVSVGLDVGGLPHPAGGWYPDPEAGRGYDHGAVMARVHQDGEPVEGVDVCAGRSC CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCC GGTDENGEAWAARLDPHDPVNVEVDVGSIDNPFVQPATRGVSFEPRPGRVLPLDFELHLT CCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEEEEC GEVDGVVRRQRGTAEPSEVSGFEMEAVDTETGEVVQTDRSVFDGLFILDQLPPGGYLVRA CCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEC SEEQAERLDVPQTATAQRISVEGDGDLVSHQDLTIHDGGEIVRVASPAEAVEQITFSYDS CHHHHHHCCCCCCCCCEEEEECCCCCEECCCCEEEECCCCEEEECCCHHHHHHHEECCCC SHTLRDHLAQLLDRLGAEQVEGGLESLYEEVVILNGEVEDGDRVMVPADRSPLDEITHWQ CCHHHHHHHHHHHHHCHHHHHHHHHHHHHCEEEEECCCCCCCEEEECCCCCCHHHHHHCC HQEELELAEEGD CHHHHHHHCCCC >Mature Secondary Structure GATGRSVAVAVWLLAAAGAFWSPSAPAPLSVESLQEEDDGEGVEDMVLRVELEGYPLSE CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHEEEEEEECCCCCCC SEYMLQRKGEIYYPLGQLARHLELAVEVDPLEGQVSGWVLDPDRTVSFDTASGMGEVGDR HHHHHHHCCCEEECHHHHHHHEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCC PLILEEEDWIQEHDDIYFREDAIQEFLPVGFEYRPRRAEVHMRADEELPILSRLEREARW CEEECCHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH ARLTDDGAGIGGEEWLPREPLPARFMTRPAWSLSLNHQQSGNGSSTSGNLAGAGDLLWHE EEECCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEC AEWRLQANDTDGIRRFDGTLGQQVGHPALERYELGRVRAPRYDLIRRGGSGMGVTLTNRP CEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHCCCCCCEEEECCCC EGMARTTFTDQSIEVEVPEGWDVELYRDGDLVDFAHDVDTDRHEFEDIDARPGTNPYTIE CCCEEEEECCCEEEEECCCCCCEEEEECCCEEEHHHHCCCCHHHHHCCCCCCCCCCEEEE FYGPHGERETISRTIEIGPGLLPPGMVHYSLDASREGVSLYEHQPRDDQDRRAAARMDVG EECCCCCHHHHHEEEECCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHCCC VTETLTVGGDLHYMEPDDEEDELTRRELVGADASFSAFGVWGRLRGAFENDQGRAWQLAL CEEEEEECCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEH ERGLGAWSLDYEYTLVDGLETDELRSRVSGDLRHGHELQVRGSLGPLRTRLRYEHQESAD HHCCCEEEECEEEEEECCCCHHHHHHHHCCHHCCCCEEEEECCCCHHHHHHHHCCCCCCC GESTWQRLRTRENVSIGGQRLRHSLTVSQADDGDPSAQGSLQTRWGRYREGRLNLGVSYG HHHHHHHHHHCCCCCCCHHHHHHEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEC LAPEAELDSANAEYSQSLHDNWRGSAQVRGSFNDRPHNLRLGISRTAREYWRFSGQGQVD CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCC TGGRWQVSVGLDVGGLPHPAGGWYPDPEAGRGYDHGAVMARVHQDGEPVEGVDVCAGRSC CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCC GGTDENGEAWAARLDPHDPVNVEVDVGSIDNPFVQPATRGVSFEPRPGRVLPLDFELHLT CCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEEEEC GEVDGVVRRQRGTAEPSEVSGFEMEAVDTETGEVVQTDRSVFDGLFILDQLPPGGYLVRA CCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEC SEEQAERLDVPQTATAQRISVEGDGDLVSHQDLTIHDGGEIVRVASPAEAVEQITFSYDS CHHHHHHCCCCCCCCCEEEEECCCCCEECCCCEEEECCCCEEEECCCHHHHHHHEECCCC SHTLRDHLAQLLDRLGAEQVEGGLESLYEEVVILNGEVEDGDRVMVPADRSPLDEITHWQ CCHHHHHHHHHHHHHCHHHHHHHHHHHHHCEEEEECCCCCCCEEEECCCCCCHHHHHHCC HQEELELAEEGD CHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA