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The map label for this gene is radA [H]

Identifier: 121997448

GI number: 121997448

Start: 731041

End: 732390

Strand: Reverse

Name: radA [H]

Synonym: Hhal_0651

Alternate gene names: 121997448

Gene position: 732390-731041 (Counterclockwise)

Preceding gene: 121997449

Following gene: 121997446

Centisome position: 27.34

GC content: 72.3

Gene sequence:

>1350_bases
ATGGCCCGGGCCCGGCGACGGTTTGTCTGCTCGGCCTGTGGCGCAGAGCAACCGCAGTGGGCTGGGCAGTGCCCGGAGTG
CGGCGCCTGGAACACGCTGGAAGAGATCGCCCAGCCGGCTGCGGCGGCCAGCACGACCACGGGTCGGGGCGCCGAGGTGA
CCACGCTCGCCGAGGTCTCGACGGCGCCGGAGCCGCGGCTGGCGACCGGCGTCGCGGAGCTGGATCGGGTGCTCGGCGGC
GGACTTGTCCCCGGGTCTGTGGTGCTCATCGGGGGCGAGCCGGGGATCGGTAAGTCCACCCTGCTGTTGCAGACGCTGGC
GACGCTGTCGCGGGATCACGCGGCGCTCTACGCCACCGGCGAGGAGTCGCTGCAGCAGGTGGCGCTGCGGGGCCACCGGC
TGGGGGTGGCGGACGATGCCATGAAGCTGATGGCGGAGACGGCGGTCGAGGAGGTCGTCGCTGCTGCCGAGCGGATCCGG
CCGCGGGCGCTGGTGCTCGATTCGGTGCAGACCTTCCACACCTCGGCCCTCGGCTCGGCGCCGGGGTCGGTCTCCCAGGT
GCGGGAGAGTGCGGCGCAGCTGGTGCGCCTGGCCAAGACCACCGGGACCGCCGTGATCCTGGTCGGACACGTCACCAAGG
AGGGCCACCTGGCCGGGCCACGGGTGCTCGAACACATGGTGGACACGGTGCTCTATTTCGAGAGCGATCAGGGCAGCCGT
TACCGCGTGGTGCGGGCGGTCAAGAACCGTTTCGGTGCCGCCAACGAGCTCGGTGTCTTTGCCATGGCCGAGGACGGCCT
GCGCCAGGTGCGCAACCCGTCCTCGATCTTCCTGTCACGCCACGATCAGGACGTGCCGGGCAGCGCGGTGTTGGTGACCC
GAGAGGGGAGTCGGCCCCTGCTCCTGGAGGTGCAGGCGCTGGTGGCCGACTCGGCCGGGAGTCAGCCGCGCCGCGTGGCG
GTGGGCCTGGACGGCAGTCGGTTGGCGCTGCTGCTGGCGGTGCTGCAGCGCCACGGCGGAATCAGCACGGCCGGCGAGGA
TGTCTTCCTCAATGTGGTTGGCGGTGTGCGGGTCCAGGAGACGGCCGGTGATCTGCCGGCGCTGGCCGCGGTGCTCTCGA
GCCTGCGCAACCGGCCGCTGCCGCGGGATTCGGTGGTCTTCGGGGAGCTCGGCTTGGCCGGCGAGGTGCGTCCCGTGCCC
GGCGGCGAGGAGCGCCTGGCCGAGGCGGCGAAGCACGGATTCACGCGGGCCGTGGTCCCGGCCAAGAACGCCCCGCGCCA
CGGGGTGGCGGGCATGGAGATCCACCCGGTGCGCCGTCTGGAGGAGGCGATCACGGCGTTGATGGGCTAG

Upstream 100 bases:

>100_bases
CCGAAGAGGTGGCGGGTGCCTGCGGGACCATCGCCTACGAGCTGTTCTGTCGGATGCCGCCGCGGGTCCGGCGGGAGCCG
GTGGACGGGGAGACGCTCTG

Downstream 100 bases:

>100_bases
AGGCCTAGGCGCCCGCTCACGCGCCGTCGGCCTTTGCGCGCTCCTCGACCGCGACTGCGCGACCGGGCCCGGACGGGGCC
CGCACCCAGATCCACCCCTC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MARARRRFVCSACGAEQPQWAGQCPECGAWNTLEEIAQPAAAASTTTGRGAEVTTLAEVSTAPEPRLATGVAELDRVLGG
GLVPGSVVLIGGEPGIGKSTLLLQTLATLSRDHAALYATGEESLQQVALRGHRLGVADDAMKLMAETAVEEVVAAAERIR
PRALVLDSVQTFHTSALGSAPGSVSQVRESAAQLVRLAKTTGTAVILVGHVTKEGHLAGPRVLEHMVDTVLYFESDQGSR
YRVVRAVKNRFGAANELGVFAMAEDGLRQVRNPSSIFLSRHDQDVPGSAVLVTREGSRPLLLEVQALVADSAGSQPRRVA
VGLDGSRLALLLAVLQRHGGISTAGEDVFLNVVGGVRVQETAGDLPALAAVLSSLRNRPLPRDSVVFGELGLAGEVRPVP
GGEERLAEAAKHGFTRAVVPAKNAPRHGVAGMEIHPVRRLEEAITALMG

Sequences:

>Translated_449_residues
MARARRRFVCSACGAEQPQWAGQCPECGAWNTLEEIAQPAAAASTTTGRGAEVTTLAEVSTAPEPRLATGVAELDRVLGG
GLVPGSVVLIGGEPGIGKSTLLLQTLATLSRDHAALYATGEESLQQVALRGHRLGVADDAMKLMAETAVEEVVAAAERIR
PRALVLDSVQTFHTSALGSAPGSVSQVRESAAQLVRLAKTTGTAVILVGHVTKEGHLAGPRVLEHMVDTVLYFESDQGSR
YRVVRAVKNRFGAANELGVFAMAEDGLRQVRNPSSIFLSRHDQDVPGSAVLVTREGSRPLLLEVQALVADSAGSQPRRVA
VGLDGSRLALLLAVLQRHGGISTAGEDVFLNVVGGVRVQETAGDLPALAAVLSSLRNRPLPRDSVVFGELGLAGEVRPVP
GGEERLAEAAKHGFTRAVVPAKNAPRHGVAGMEIHPVRRLEEAITALMG
>Mature_448_residues
ARARRRFVCSACGAEQPQWAGQCPECGAWNTLEEIAQPAAAASTTTGRGAEVTTLAEVSTAPEPRLATGVAELDRVLGGG
LVPGSVVLIGGEPGIGKSTLLLQTLATLSRDHAALYATGEESLQQVALRGHRLGVADDAMKLMAETAVEEVVAAAERIRP
RALVLDSVQTFHTSALGSAPGSVSQVRESAAQLVRLAKTTGTAVILVGHVTKEGHLAGPRVLEHMVDTVLYFESDQGSRY
RVVRAVKNRFGAANELGVFAMAEDGLRQVRNPSSIFLSRHDQDVPGSAVLVTREGSRPLLLEVQALVADSAGSQPRRVAV
GLDGSRLALLLAVLQRHGGISTAGEDVFLNVVGGVRVQETAGDLPALAAVLSSLRNRPLPRDSVVFGELGLAGEVRPVPG
GEERLAEAAKHGFTRAVVPAKNAPRHGVAGMEIHPVRRLEEAITALMG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=457, Percent_Identity=56.4551422319475, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 47017; Mature: 46886

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARARRRFVCSACGAEQPQWAGQCPECGAWNTLEEIAQPAAAASTTTGRGAEVTTLAEVS
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCCCEEEEEHHHC
TAPEPRLATGVAELDRVLGGGLVPGSVVLIGGEPGIGKSTLLLQTLATLSRDHAALYATG
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC
EESLQQVALRGHRLGVADDAMKLMAETAVEEVVAAAERIRPRALVLDSVQTFHTSALGSA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PGSVSQVRESAAQLVRLAKTTGTAVILVGHVTKEGHLAGPRVLEHMVDTVLYFESDQGSR
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECCCCCH
YRVVRAVKNRFGAANELGVFAMAEDGLRQVRNPSSIFLSRHDQDVPGSAVLVTREGSRPL
HHHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCHHEEEECCCCCCCCCEEEEEECCCCCE
LLEVQALVADSAGSQPRRVAVGLDGSRLALLLAVLQRHGGISTAGEDVFLNVVGGVRVQE
EEEHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEC
TAGDLPALAAVLSSLRNRPLPRDSVVFGELGLAGEVRPVPGGEERLAEAAKHGFTRAVVP
CCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEECC
AKNAPRHGVAGMEIHPVRRLEEAITALMG
CCCCCCCCCCCCEECHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARARRRFVCSACGAEQPQWAGQCPECGAWNTLEEIAQPAAAASTTTGRGAEVTTLAEVS
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCCCEEEEEHHHC
TAPEPRLATGVAELDRVLGGGLVPGSVVLIGGEPGIGKSTLLLQTLATLSRDHAALYATG
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECC
EESLQQVALRGHRLGVADDAMKLMAETAVEEVVAAAERIRPRALVLDSVQTFHTSALGSA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PGSVSQVRESAAQLVRLAKTTGTAVILVGHVTKEGHLAGPRVLEHMVDTVLYFESDQGSR
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECCCCCH
YRVVRAVKNRFGAANELGVFAMAEDGLRQVRNPSSIFLSRHDQDVPGSAVLVTREGSRPL
HHHHHHHHHHCCCCCCCCEEEECHHHHHHHCCCHHEEEECCCCCCCCCEEEEEECCCCCE
LLEVQALVADSAGSQPRRVAVGLDGSRLALLLAVLQRHGGISTAGEDVFLNVVGGVRVQE
EEEHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEC
TAGDLPALAAVLSSLRNRPLPRDSVVFGELGLAGEVRPVPGGEERLAEAAKHGFTRAVVP
CCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEECC
AKNAPRHGVAGMEIHPVRRLEEAITALMG
CCCCCCCCCCCCEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]