Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is 121997439

Identifier: 121997439

GI number: 121997439

Start: 718244

End: 718798

Strand: Reverse

Name: 121997439

Synonym: Hhal_0640

Alternate gene names: NA

Gene position: 718798-718244 (Counterclockwise)

Preceding gene: 121997440

Following gene: 121997438

Centisome position: 26.84

GC content: 68.65

Gene sequence:

>555_bases
ATGAGCACGATGAGCCCCAACAAGCTCGCACACGAGGCCATTCTGCACGCCCTCGAGTGCAAGCAGGAGCCGGGCAGCGT
CGAGCAGATCGAGAAGCTCACATTCCGGGAGTACCTGTACCTGCTGTCCCAAGCCCGCTACTTCCTCGATATCCACGTCC
ACCCCGAACGCCTGGCGGCCGCTATCGAGCGGGCTCGCCGCCGTGCGCAGGAAGACGACCTGGCCGATGAGCTCATCCGC
CACCACGCCCATGGGGCGATGATGGAAGCGCTGTTCGGTATGACGCCCGCCGAGGTCGCCCGTCGCCGGCGGACGCTGGG
GGTGGCCCGGGATCCCGGCCGGCCGCGGCGCTTGCAGCCGGAGCAGGCCGACGCCGTCTGGAGATCCTGGAAACAACACC
ATGGTCTGCCCGGCCCTGAGCGCTACTTGCGTGTCGCGCAACGCTGCCGCGTGCCTGCTCAGGCCGTATGGCAGCTCGTC
CAGGAGGCCGATTCCATCCAGCGAGAGTACGCCGCGCGACGCCAGGGTGTGCCGGCGGTGGAGGAGGGGCGGTGA

Upstream 100 bases:

>100_bases
CGGACGCCGACATCCACGATTTCGTGCAGCTGATTCAGCTTTGTCGCCAACTCCGCAAGACCGCCACCGAGCGCAATATG
GACCTATGGGAGGGCTAGCC

Downstream 100 bases:

>100_bases
TGAGTGCCATCAAGCTCAGCCAGGAAGAACTGGAGGCCCTGGCCGGCCTCCCCAGCCTGGCGCTGCGTGTCTATATCCTG
GGCATCCGTCCGCACATGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSTMSPNKLAHEAILHALECKQEPGSVEQIEKLTFREYLYLLSQARYFLDIHVHPERLAAAIERARRRAQEDDLADELIR
HHAHGAMMEALFGMTPAEVARRRRTLGVARDPGRPRRLQPEQADAVWRSWKQHHGLPGPERYLRVAQRCRVPAQAVWQLV
QEADSIQREYAARRQGVPAVEEGR

Sequences:

>Translated_184_residues
MSTMSPNKLAHEAILHALECKQEPGSVEQIEKLTFREYLYLLSQARYFLDIHVHPERLAAAIERARRRAQEDDLADELIR
HHAHGAMMEALFGMTPAEVARRRRTLGVARDPGRPRRLQPEQADAVWRSWKQHHGLPGPERYLRVAQRCRVPAQAVWQLV
QEADSIQREYAARRQGVPAVEEGR
>Mature_183_residues
STMSPNKLAHEAILHALECKQEPGSVEQIEKLTFREYLYLLSQARYFLDIHVHPERLAAAIERARRRAQEDDLADELIRH
HAHGAMMEALFGMTPAEVARRRRTLGVARDPGRPRRLQPEQADAVWRSWKQHHGLPGPERYLRVAQRCRVPAQAVWQLVQ
EADSIQREYAARRQGVPAVEEGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21237; Mature: 21105

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTMSPNKLAHEAILHALECKQEPGSVEQIEKLTFREYLYLLSQARYFLDIHVHPERLAA
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
AIERARRRAQEDDLADELIRHHAHGAMMEALFGMTPAEVARRRRTLGVARDPGRPRRLQP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
EQADAVWRSWKQHHGLPGPERYLRVAQRCRVPAQAVWQLVQEADSIQREYAARRQGVPAV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EEGR
CCCC
>Mature Secondary Structure 
STMSPNKLAHEAILHALECKQEPGSVEQIEKLTFREYLYLLSQARYFLDIHVHPERLAA
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHH
AIERARRRAQEDDLADELIRHHAHGAMMEALFGMTPAEVARRRRTLGVARDPGRPRRLQP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
EQADAVWRSWKQHHGLPGPERYLRVAQRCRVPAQAVWQLVQEADSIQREYAARRQGVPAV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EEGR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA